Citrobacter portucalensis: FOB25_22525
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Entry
FOB25_22525 CDS
T06238
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
cpot
Citrobacter portucalensis
Pathway
cpot02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
cpot00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
FOB25_22525 (pdeR)
Enzymes [BR:
cpot01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
FOB25_22525 (pdeR)
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
GGDEF_2
Motif
Other DBs
NCBI-ProteinID:
QET59043
LinkDB
All DBs
Position
complement(4701324..4703315)
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AA seq
663 aa
AA seq
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MKDVRELVTLYSYVGTHNPYWRLSEDCNILHFSIDETADAEQTIELSPEQADRIREMTVI
TSSLLMTLPIEDDDIPVHLVGRKINKREWAGSASAWDDTPSVARDLAQGLSFAEQVVSEA
NSVIVILDRMGNIQRFNRLCEEYTGLREREVIGQSVFTLFMSRREAAASRRNIEVFFREG
NSYEVERWVKTCKGQRLFLFRNKFVHNGSGKNEIFLICSGTDITEERRAQERLRMLANTD
SITGLPNRNAIHELISDAIENAGDTQVGIVYLDLDNFKKVNDAYGHMFGDQLLQSVSLAI
LSCLDDNQLLARFGGDEFIVLATETSQSTLEATASRILTRLRQPFRIGLIEVYTGCSIGI
SLAPQHGQDCESVIRNADTAMYTAKEGGRGQFCVFSPEMNQRVFEYLWLDTNLRKALEND
QLVIHYQPKITWRGEVRSLEALVRWQSPERGLIPPLEFISYAEESGLIVPLGRWVILDVV
RQVAKWRAKGINLRVAVNVSARQLADQTLFTDLKQVLHELDFEYCPIDVELTESSLIENE
QLALSVIQQFSQLGAQIHLDDFGTGYSSLSQLARFPLDAIKLDQTFVRDVHKQPISQSLV
RAIVAVAQALNLQVIAEGVESAKEDAFLTKNGVNERQGFLFAKPMPAAAFERWYRRHLNK
KTR
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacgtccgggagctggttacgttgtatagctatgtgggcactcataacccctac
tggcgtttgtcagaggattgcaacatcctgcatttctctattgacgaaacagcagacgct
gagcagaccatcgaattatcacccgagcaggccgaccgcattcgcgagatgacggtaatt
acgtcaagcctgttgatgacgttacccattgaagatgacgatattccggtacatttggtc
gggcggaaaatcaataagcgcgaatgggccggcagcgcatcagcctgggatgacacccct
tccgtcgcacgcgatctggctcaaggtctctcttttgccgaacaggtggtttcagaagcc
aattccgttattgtcattcttgaccgcatgggcaacattcagcgttttaaccgtctgtgc
gaagagtacaccggactcagagaacgtgaagtcattggccaaagcgtattcacactgttt
atgagtcgacgtgaagccgcagcctccagacgcaacatcgaggtcttttttcgcgaaggc
aactcatatgaagtcgaacgttgggtgaagacctgcaaaggtcagcgcctgtttcttttt
cgcaataagtttgtacataacggtagcggcaagaacgaaatatttctgatctgttccggc
accgatatcactgaagaacgccgcgcgcaggaacgcctgcgtatgttggctaataccgac
tccatcaccggattaccgaaccgtaacgccattcatgagctgataagcgacgcgattgag
aacgcaggtgatactcaggttgggattgtatatctcgatctggataacttcaaaaaggtg
aacgatgcctacgggcacatgtttggcgatcagctgttgcagagcgtgtcgctggcaatt
ctcagttgtcttgacgacaaccagctattggctcggtttggcggtgatgaatttatcgtc
cttgccaccgaaacgtcccagagcactctggaagctaccgcatcgcgcattctgacacgc
ctgcgtcaaccctttcgcattggcctgattgaagtctataccggctgctctattggtatt
tccctcgctccacagcatggtcaggactgcgagagcgtcattcgtaacgccgatacggcc
atgtacaccgcgaaagaaggcggccgcggacagttttgtgttttctctccggaaatgaat
cagcgggtatttgaatacctgtggctggatactaacctgcgcaaggcgctggaaaacgat
caactggttatccattatcagccaaagataacctggcgaggcgaagtgcgcagcctggag
gcgctggtacgctggcagtctccggaacgcggcctcattccaccactggaatttatctcc
tacgccgaagaatcagggcttattgttccgctgggtcgctgggttattctggacgttgtg
cgtcaggtcgcaaaatggcgcgccaagggaatcaatctgcgcgtggcggtaaacgtttct
gcccgccagctcgccgatcagacgctatttaccgatctcaaacaggtgcttcatgaactc
gactttgaatattgccccattgatgtcgagttaacggaaagcagtttgattgaaaatgag
cagttggcactgtccgtcattcagcagtttagccagttgggggcgcaaatccatttggat
gattttggtactggatattcgtcactgtctcaactggcccgcttcccgcttgatgcaatt
aaattggatcaaacctttgtcagggatgtacacaaacaacctatttcgcagtcgctggta
cgtgccattgttgcggtcgcacaagcactcaatctgcaggtcatcgccgaaggtgttgaa
agcgcgaaagaggatgcctttttaaccaaaaatggcgtcaacgaacgtcagggttttttg
tttgccaaaccaatgccagcggctgcatttgaacgttggtatcgacgacatctgaataaa
aaaacgcgctaa
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