Citrobacter portucalensis: FOB25_22535
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Entry
FOB25_22535 CDS
T06238
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
cpot
Citrobacter portucalensis
Brite
KEGG Orthology (KO) [BR:
cpot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cpot03016
]
FOB25_22535
Enzymes [BR:
cpot01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FOB25_22535
Transfer RNA biogenesis [BR:
cpot03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FOB25_22535
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
OSR1_C
PilZ
S1CSD-TOTE-2
ODP
Motif
Other DBs
NCBI-ProteinID:
QET59045
LinkDB
All DBs
Position
complement(4703581..4705515)
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AA seq
644 aa
AA seq
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MLQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI
VAVIHTEKDRESAEPEELIEPFLTRFVGKVQGKNDRLSIVPDHPLLKDAIPCRAARGVEH
EFKEGDWAVAEMRRHPLKGDRTFYAELTQFITFADDHFVPWWVTLARHNLEKEAPDGVAT
EMLDEGLVREDLTALNFVTIDSASTEDMDDALYAEEQADGTLQLTVAIADPTAWIAEGSK
LDKTAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMSITADGTIEDNITF
FAATIESKAKLAYDNVSDWLEGTGEWQPENDAIAEQIRLLHRICLSRGEWRHNHALVFKD
RPDYRFVLGEKGEVLDIVAEPRRIANRIVEESMIAANICAARVLRDKLGFGIYNVHMGFD
PANADALASLLKTHGMHVDAEEVLTLEGFCKLRRELDAQPSGFLDSRIRRFQSYAEISIE
PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETVARPQDDTTVQMAERRRLNRM
AERDVGDWLYARFLSDKAGTDTRFAAEIIDVSRGGMRVRLVDNGAVAFIPAPFLHAVRDE
LVCSQESGTVQIKGEVVYKVTDVIDVTIAEVRMETRSVIARPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcttcaggacaacccgctgctagcgcagcttaaacagcaactacattcccagacgcca
cgtgctgaaggggtggtaaaagccacggaaaaaggctttggcttcctggaagtcgatgca
caaaaaagctatttcattccaccgccgcagatgaaaaaagtgatgcatggcgaccgtatt
gttgcggttatccatacagaaaaagaccgtgagtctgctgagccggaagaactgatcgaa
cccttcctgacgcgcttcgtgggtaaagttcagggcaaaaatgaccgtctgtccattgtg
ccggatcatccgttactgaaagatgctattccttgtcgtgcagcccgcggcgttgaacat
gaatttaaagaaggcgactgggctgttgcagaaatgcgccgccatccgctgaaaggcgat
cgcaccttctacgccgagttaacccaatttatcacttttgctgatgaccactttgtcccg
tggtgggtcacactggcacgccataatctggaaaaagaagcaccagacggtgtagcaacc
gaaatgctggacgaaggcctggttcgtgaagatttaaccgccctcaatttcgtcaccatc
gacagcgccagcaccgaagatatggacgatgcgctgtatgctgaagaacaagctgacggc
acgctacaattaaccgtcgccattgccgacccaacagcctggattgcagaaggcagcaag
ctggataaaacggctaaaattcgcgcgttcaccaattatttaccggggttcaatatcccg
atgttaccacgtgaattgtctgacgatctctgctctctgcgcgcgaacgaagtgcgcccg
gttttagcttgtcgtatgagcattaccgccgatggcacgattgaagacaacatcaccttc
ttcgccgcaaccatcgagtctaaagcgaagctggcctatgacaatgtttccgactggctg
gaaggtactggcgagtggcaaccagaaaacgacgcgattgcggaacaaatccgtctgctg
catcgtatttgcctgagccgaggagagtggcgtcataaccacgcgctggtctttaaagat
cgcccggattaccgtttcgttctcggtgaaaaaggtgaagtactggacatcgtcgctgag
ccacgccgcatcgcaaaccgtatcgtggaagaatccatgattgcggcaaatatttgcgcc
gcccgtgtgcttcgcgacaagctgggcttcggtatttataacgtccatatgggattcgac
cctgccaacgccgacgctctggcctcgctgctgaaaacccacggtatgcacgtcgatgcc
gaagaagttctaacactggaaggtttctgcaaactgcgccgcgaactggatgcacagcca
tccggtttcctcgacagccgaattcgccgcttccagtcttacgctgaaattagtattgag
ccaggtccacactttgggctgggtctggaggcatatgccacctggacttccccaatccgt
aagtacggcgatatgatcaaccaccgtctgcttaaggctgtcatcaaaggcgaaaccgtc
gctcgacctcaggatgataccaccgtgcaaatggcagaacgtcgtcgcctgaaccggatg
gctgagcgtgacgtgggtgactggctatacgcccgtttcctgagtgataaagccggaacc
gacacccgctttgcggccgagatcatcgacgtcagccgcggcggcatgcgcgtacgtttg
gttgataatggcgctgttgcctttattcctgcccccttcctgcacgccgtgcgtgatgaa
ctggtctgcagccaggaaagtgggaccgtacaaatcaaaggtgaagtagtttacaaagtc
actgatgtgattgacgtaactatcgccgaagttcgcatggaaacccgtagcgttatcgcg
cgtccagcagcgtaa
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