Corynebacterium poyangense: GP475_06780
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Entry
GP475_06780 CDS
T08294
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cpoy
Corynebacterium poyangense
Brite
KEGG Orthology (KO) [BR:
cpoy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpoy03019
]
GP475_06780 (hrpA)
Enzymes [BR:
cpoy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GP475_06780 (hrpA)
Messenger RNA biogenesis [BR:
cpoy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GP475_06780 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
nSTAND3
AAA_22
HA2_N
NACHT
ResIII
AAA_25
ABC_tran
PhoH
TsaE
Motif
Other DBs
NCBI-ProteinID:
QNQ90373
UniProt:
A0A7H0SP98
LinkDB
All DBs
Position
1442848..1446753
Genome browser
AA seq
1301 aa
AA seq
DB search
MSHSASSPTRADLFSRLPHVSLIEERRFRRRLKKARSSSALNAIARDISAAEHRLQRRLD
VIPELSFPEQLPVSARRSDIAKAIEENQVVIIAGETGSGKTTQIPKICLDIGRGRRGLIG
HTQPRRLAARSVAERIAEELSQPIGSTVGYAIRFDDHVSPDTSIKLMTDGILLAEMQRDR
FFNAYDTIIIDEAHERSLNIDFLLGYLKQLLPKRPDLKVIITSATIDPESFAQHFSQPDG
TPAPIIEVTGRTYPVEIRYRPLTQEKGKKLIDIDPLDGVISACEELMAEGPGDILCFFPG
ERDIRDALEAIEGRRWKGVDVTPLFGRLSNQEQHRVFAPHSGRRIVLATNIAETSLTVPG
IRYVVDTGTARISRYSSRTKVQRLPIEEISQASANQRAGRCGRVAEGIAIRLYSEQDFLA
RPEFTDPEILRTNLASVILHMAHLHLGDISQFPFVQAPDTKAIRDGIALLHELGALEGKE
KHHEPVLTKVGKTLAQIPVDPRMARMLIEADRLGCLRDTIVVVAAMTVQDVRERPLEFQT
QAAQKHARFRNKKSDFLGILNLWDYIDEQRKELSGNQFRKRMKAEYLHYLRIREWRDLVS
QLHDVTKDLGWTEPEFRAEQRDPEAIHRSLLSGLLSHIGVKDSSTPDFQGARNTRFRIFP
GSALSKKPPHFVMAAELVETSRLWAREVAEIKPEWAENLAPHLLKHHYSEPVWSAKKVAA
QVHQRSTLFGVPVVDDRLVPYHRIDPRAARDMFIRHALVDGEWNTHHEFFHRNLAALDEA
GDVEDRLRRRGIVADDEALFQFYDARLPEYVTHGKSFDSWWKKNQQQHPHLLDFDKKALL
SEEAEAATEVDFPNSWTHSQHQFDLSYRFEPGHPQDGVTLHVPLPMLASIDATEFDWLVP
GLRYELLTELIRSLPKTLRRNIVPAPEYAEKALQRLRPYASSLTAQLAEILSDLGGQRIT
AEDFQLGKVSPHLKMSYAAIDRHQKIVDADKDLAALVKRRSQQIRSSVSRVSRNVESTVV
KTWNQDTLGTIPRSIMTTVDGQNVEAYPALVVSAQGLSMKVLPTQAAADTAMMTSILTLL
LREITVGVAPMIKGLPLQQKVAIDRYPHGGADGLINDARIAATRDALIANGGPVRDPDEF
TILLGKVKDEVPGRVRKSVVALAPALVKFEKIQAELATWTGEAIVDMQSQLDFMLPQNAL
TKYGISRLQHLPRYLQAIEIRLEEMSRDPDRDADRQDQVEEAQEYLAKKLTKLPPNRAQS
TAVRDIQWLIEEFRVSLFAQRLGTAQSVSMRRIQKAVDKLR
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgtctcactctgcctcttcccccacccgcgctgatcttttttctcgactcccccacgtt
tccctcatcgaggaacgtcgcttccgtcggagattaaaaaaggcccgctccagctccgct
ctcaacgctatcgcacgagatatttctgccgctgaacaccgccttcaacgtcgtctcgac
gtaatccctgagttgtctttcccggaacaactgccggtgagtgcgcgcagatctgacatc
gcaaaggcaattgaagaaaatcaggtcgttattattgccggcgagacaggttcgggtaaa
actacacagatccccaaaatttgtctcgacataggccgggggcgccgggggctgatcggt
cacactcaacctcgccgcttagccgctcgcagtgttgctgaaagaattgccgaagaactg
tctcaaccaattggctcgacagtgggctacgccatccgctttgatgatcacgtttcacca
gacaccagcatcaagctgatgacagatggaatcttgctggcagaaatgcagcgagatcgc
ttctttaacgcctatgacaccatcatcatcgacgaagcccacgaacgcagcttaaatatt
gacttcctcctgggttatctgaaacagctgctgccgaaaagaccggatctcaaggtaatc
atcacctcagctactattgacccagagagttttgcccagcatttttcccagcccgatggc
accccagctcccattattgaagttactggccgaacgtacccagtcgagatacggtatcga
cccttaacccaagaaaagggcaaaaaacttatcgatattgatccgctagatggtgtaatc
tccgcctgcgaagaactcatggctgaagggcccggggatattttatgctttttccctgga
gaaagagatatccgcgatgctttagaagccattgagggacgtcgctggaaaggagttgac
gtcactcccctcttcggccgcttatctaaccaggaacagcacagagtctttgctcctcac
tcgggccgacgcattgtcttggccaccaatatcgcggaaacgtcactcaccgtacccgga
attcgctatgtggtagataccggaaccgctcgaatttcacgttattcctctcgcactaag
gttcaacgactacccatcgaggaaatctctcaggctagcgccaatcagcgtgctggccgg
tgcggacgagttgctgaaggtattgccattcgtctttattctgagcaagattttctggct
cggccggaatttaccgatccggagattttgagaacaaatctggcaagtgtcattttgcat
atggctcatttacatctgggagacattagccaattcccctttgttcaagctccagataca
aaagccattcgagacggtatagcacttcttcatgaattaggggctttagagggcaaagaa
aaacatcatgaacctgtgttgacgaaagttggaaaaaccttggcgcaaattccggttgat
ccgcggatggctaggatgcttatcgaggctgatcgactgggttgtctcagagacaccata
gtggttgtggcggctatgacggtacaagatgtccgtgaacgtcccttagaatttcagacc
caagcagcccaaaaacatgcgcgctttagaaataagaaaagtgacttcctggggatttta
aatttatgggattatattgatgaacagcgcaaagagctatcaggaaaccaattccgtaaa
aggatgaaagctgaatatctccattatctccgaatcagagaatggcgagatttagtttcc
cagcttcatgatgtcacaaaagatttgggctggacggagccagaattccgagccgaacaa
cgtgaccctgaagcaattcaccgatccctcctatcgggtttgctatctcatatcggagtc
aaggattcctccactcctgatttccagggtgcgcgtaatacccgtttccgtattttccct
ggatcggcgctttccaaaaagccgccacattttgttatggcggcggagctcgtcgaaaca
tctcggttatgggctcgtgaagtggctgagatcaagccggaatgggctgagaatctagcg
ccgcatttgcttaagcatcactattccgagcctgtgtggtctgcgaagaaggttgctgcg
caggtacatcaacgctctactctttttggtgtcccggtcgtcgatgaccggcttgttccc
tatcaccgaatagatccacgtgccgcccgcgatatgtttattcgccacgcactagtcgat
ggggaatggaacacccatcatgagttctttcatcggaatctcgctgcattggatgaagcc
ggagacgtcgaagataggctacggcgccgtgggattgtcgccgatgatgaggcactattc
cagttttatgatgctcgtctgccggagtacgtaacccacggcaagtcttttgactcttgg
tggaagaagaatcaacaacaacaccctcacctcttagatttcgataaaaaggctctgttg
agtgaagaagccgaagcagcaaccgaggtggatttcccaaattcgtggactcattctcaa
catcaatttgacttgtcttatcgctttgagcccggccatcctcaagatggggttactttg
catgttcccctgcccatgttggcttcaattgatgccacggaatttgactggttggttcct
gggttgcgctatgaattgctaaccgaactgattagaagcctgccgaagactttaaggcgg
aatatagttccggcacctgagtatgctgagaaagctcttcaacgactacgcccctacgcc
tcatccctgactgctcagttagctgagattctcagtgatctaggggggcaacgtatcacg
gcggaagattttcagcttggcaaagtctctccgcatttaaagatgtcctatgcggctatt
gaccgtcatcaaaaaatagtcgatgcggataaagatttagctgccctagtcaagcgccga
agccagcaaattaggtcatcagttagtcgcgtgagtcgcaatgtggaaagcacggtcgtt
aaaacctggaatcaagatacgctagggacaatccctcgcagcatcatgacgacagtggac
ggacaaaacgttgaggcatatcccgcgttagtagtcagcgctcaaggattatctatgaag
gttctccctacccaggccgcagcagatacggcgatgatgaccagcattctcaccctcctg
ttacgggaaatcactgttggggtggcaccaatgatcaaagggcttcccttgcaacaaaaa
gtagctattgatcgctatcctcacggtggcgcggatggtcttatcaacgatgctcggata
gcggcgaccagggatgctctgatagcaaacggtggcccagtgcgtgaccccgatgaattc
accatattgttggggaaggtgaaagatgaagtaccaggtcgggtcaggaaaagtgtggtg
gccttggcccccgcgctggtgaaatttgagaaaattcaagccgaattagccacctggact
ggcgaggcaatcgtggatatgcagagtcagcttgacttcatgttgcctcagaatgcactc
acgaaatatgggatttcccgccttcaacacttgccacgttatctccaagccattgaaatt
cgtttagaggaaatgagccgcgatccggatcgagacgctgatcgtcaggaccaagtggaa
gaagcacaagagtatttagcgaagaagctcacgaaacttccaccgaacagagctcagtcc
acagctgttcgcgatattcagtggctcatcgaggagttccgcgttagtctcttcgctcaa
cgtctagggacagctcagtccgtttctatgcggcgtattcaaaaagcagtagataagctg
cgctag
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