KEGG   Corynebacterium pseudotuberculosis P54B96: CpP54B96_0822
Entry
CpP54B96_0822     CDS       T01771                                 
Symbol
deaD1
Name
(GenBank) DEAD-box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
cpp  Corynebacterium pseudotuberculosis P54B96
Pathway
cpp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cpp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CpP54B96_0822 (deaD1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpp03019]
    CpP54B96_0822 (deaD1)
   03009 Ribosome biogenesis [BR:cpp03009]
    CpP54B96_0822 (deaD1)
Enzymes [BR:cpp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CpP54B96_0822 (deaD1)
Messenger RNA biogenesis [BR:cpp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CpP54B96_0822 (deaD1)
Ribosome biogenesis [BR:cpp03009]
 Prokaryotic type
  rRNA helicases
   CpP54B96_0822 (deaD1)
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 UvrA_inter adh_short Surface-like_ins_dom
Other DBs
NCBI-ProteinID: AFF21964
LinkDB
Position
859643..861559
AA seq 638 aa
MSITDDATGGANEPDEKILSESQDNSQVDEGSITLDDVIADVDDSRVANTSEDTGSAQEA
DSDSNDGFEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAF
ALPILSRINVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLS
GLRRGAQIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERILEDTPAD
KQVALFSATMPNGIRRLSKQYMKDPREIQVKSETRTNTNITQRFLNVAHRNKLDALTRIL
EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILV
ATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSI
ERATNAELIEMDLPTVDEVNESRKEKFADSITESLEDSQVAIFRNLIKAYAEEHDTPLED
IAAALATQARAGSEFLMKEPPPEKRRDRGDRGSRFERSGDMAVYRLAVGKRQHVRPGAIV
GALANEGGLSNKDFGRITIAVDHTLVELPKGLPQSVFDNLRDTRISGQLINIEKDNGRPG
RRDDYRGDDRRGGYRRDRRDDRRGDRRDRGDRRDRYRG
NT seq 1917 nt   +upstreamnt  +downstreamnt
atgagcattaccgatgacgccaccggcggcgctaacgagccggatgagaagattttgtcg
gaatctcaggacaattcgcaggtagacgaaggcagcatcacacttgatgatgttattgct
gatgtagacgactccagggttgcgaacacttctgaggacaccggctccgcgcaagaagcg
gacagtgacagtaatgatggctttgaggctttgggcctcccagacgcaatccttaaggca
gtcgccaaggttggctttgaaacgccgtctcctattcaggcacagaccatcccagtcctc
atggaggggcatgatgtgatgggtctggctcagaccggtacgggtaagaccgctgcgttt
gccctcccgattctttcccgtatcaatgtgaagaagcgccacccacaggcgctgatcctt
gctcctactcgcgagcttgctcttcaggttgcggactctttccagtcttttgcagaccac
ctcggagacattcatgttctgccgatctatggtgggcaggcatatggtatccaattgtcg
ggtcttcgccgtggcgcgcagatcatcgtgggtaccccaggtcgtgttattgaccacctg
gaaaagggctcactcgatatctctaacctgaactatctcgttcttgacgaggcagatgag
atgctcagcatgggcttccaggaagatatcgagcgtattcttgaggatactcccgcggac
aagcaggttgctttattttctgcgacgatgcccaacggcattcgccgtctgagcaagcag
tacatgaaggatcctcgtgagattcaggtgaaatccgagactcggaccaacaccaatatc
acgcagcggttccttaatgttgctcaccgtaacaagcttgatgccttgactcgaatcctt
gaggtcaccgagtttgaagcgatgattatgttcgtgcgcacaaagcatgaaactgaagag
gtcgcagagaagttgcgtgctcgtggtttttctgccgccgccatcaatggcgatatcgca
caggcacagcgtgagcgcaccgtggaccaactcaaagatggtcgtctagacattcttgtg
gccacagacgtggcagcgcgtggtctggatgtcgagcgcattactcacgtgttcaactac
gacattcctaatgacaccgaatcttatgttcaccgcattggtcgtaccggccgcgctgga
cgtagcggtgaggcaattctttttgttaccccacgtgaacgtcgtatgctgcgctccatt
gagcgtgctaccaatgcagagcttattgaaatggaccttcctacggtcgacgaggttaac
gagtcccgtaaggaaaagtttgcagattccatcacagaatcgctagaagactcccaggtt
gcgattttccggaacttgatcaaggcctacgcagaagagcatgacaccccacttgaggac
attgctgctgccttggctacccaggctcgtgctggtagtgagtttttgatgaaggagcca
ccaccagagaagcgtcgtgatcgtggtgaccgcggttctcgttttgagcgctctggcgat
atggcagtgtatcgccttgccgtgggtaagcgtcagcatgttcgtccgggcgctattgtt
ggcgcactggcaaacgaaggcggattgagcaataaggactttggtcgtatcacaattgct
gtggaccacacgttggtggagcttcctaagggactcccacaatctgtctttgataatcta
cgcgacactcgtatctcgggtcagctgattaacattgagaaggacaatggtcgtccgggg
cgtcgtgatgattaccgcggtgatgaccgtcgtggtggataccgtcgcgatcgtcgtgat
gatcgtcgtggcgaccgccgagaccgcggcgaccgccgtgatcgctatcgtggctag

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