Corynebacterium pseudotuberculosis C231: CPC231_03565
Help
Entry
CPC231_03565 CDS
T01877
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cpq
Corynebacterium pseudotuberculosis C231
Pathway
cpq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CPC231_03565 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpq03400
]
CPC231_03565 (mfd)
Enzymes [BR:
cpq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CPC231_03565 (mfd)
DNA repair and recombination proteins [BR:
cpq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CPC231_03565 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
UB2H
AAA_30
DUF3638
Motif
Other DBs
NCBI-ProteinID:
ADL10191
UniProt:
D9Q9G5
LinkDB
All DBs
Position
750431..754225
Genome browser
AA seq
1264 aa
AA seq
DB search
MSTDSAVTNRHHPAMLAGLLKVAATDPKIKGLLEHVGDSALHITGIDQSRPWAIGALSHR
APVLVITATGREAEDLTAELRAMLGDSVAWFPAWETLPHERLSPAADVAGQRAKILSHLN
ELRVVVTAARGVSQPILQEAEGRNALLLETEKDYDLEDLTRQLVFRAYQHVDLVAKRGEF
ATRGGILDIFPTTMDRPVRLEFWGDEITEIREFSVADQRAIPDSSHASVEIFPARELLVI
PGVAERAGDLALKYQGNPTLQELLSKLADGAPADGMEALIPALVDTPLVTLPELMPQGTH
VIAVGPEKIRTRVADLQATDAEFLAAGWEAAAMGASGPIAAQGLDLEASSYRSYESLEIS
ARQAGCSWWTFAPTGMFEADEADTLPLDFEAGPTPRGDLSQIEEMMSLLLAHTSAGGRAA
FIAPAKGAIKRMVDRFKEKGIPTKVATPGWEPTPGEVTLYQALSHAGLVFPKVRKKAGSE
ALPLVVVTETDLTGNRVGDIAGAKRRPAKRRNRVDPLALKTGDFVVHETHGIGRFLKMTE
RTITSGDETSRREYIVLEYAPAKRGQPADQLFVPMDSLDLLSKYVGGEKPALSKMGGSDW
KNTKKKARAAVREIAGELVELYAKRQSAPGHPFAPDSPWQYEMEDNFPYVETEDQMMAIE
AVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVVVLVPTTLLAQQHLSTFD
ERMAGFPVNLRGLSRFTSTVEAKETIKGLADGTVDIVIGTHRLLQTGIQWKNLGLVIVDE
EQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTYV
GAQEDKQIAAAIRRELLRDGQVFFVHNKVSDIEKKARDLRELVPEARIVVAHGQMSEELL
EQTVQGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERG
YAYFLYPKGQTLTENSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGV
GFDLYVRLVGEAVEAYRALADGKIVDATDDGLKEIRIDLPVDAHIPESYINAERLRLEVY
RKLAASQSNADLILAVEEMEDRYGPLPEEVKRLLAVARLRHLAKSAGISDIGVQGTRIKI
HPVELPDSKQVRLKRLLPSATYRAAAKAIQLSFPKEGRNVTDKPLRDVALLQWVADFLSE
MFELPRISVTGEAVSEKIISVGEPQVFHGRTRATQRDVTKRVERNDDEDYEDKREARRRK
FRMR
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
ttgtcaactgatagcgcagtcactaaccgccatcatcccgccatgcttgcggggctactc
aaagtcgcggcgaccgaccccaagatcaaaggcctactggaacacgttggtgattcagcc
ctacacattacggggattgatcaatctcgcccatgggctatcggggcattatcgcaccgg
gctccagtgctggtgatcacggctacggggcgtgaagcagaggacctcactgcagaactt
cgggcaatgctcggcgactccgtagcctggtttccggcatgggagacacttccccacgag
aggcttagcccagccgcggatgttgcggggcaacgagctaagattttgtcgcatctgaat
gaactacgcgtggtggtaactgctgcacgcggtgtcagccagccgattcttcaggaagca
gaggggcgcaatgcgctcctcctagagactgaaaaagattatgatttagaagatctgacc
cggcaacttgtattccgggcttatcagcacgttgacctcgtggctaagcgcggagaattt
gctactagaggcggaatcctcgacatatttcccacgactatggatcgacccgtgcgctta
gaattctggggagacgagatcacagagatccgagagttctccgtagctgaccagcgagca
atcccggattcttcccacgcgtctgtagaaatatttccggctcgtgaactccttgtcata
cccggcgtagcggaacgcgccggtgatttagctctgaaatatcagggaaaccccacgctg
caagaactcttatctaaattggcagatggcgcccccgccgatggcatggaagcgctcatc
ccagcgctcgtggataccccgttagtcactctgcctgagcttatgccccaggggacgcat
gtgatagcagtcggaccggagaagattcgcactagagtcgcggatttacaagctaccgat
gcagagttccttgcggcgggatgggaggctgcggctatgggggcctcggggccgattgcg
gctcaaggattagatctagaggctagttcttatcgttcttatgagtccttagaaatatct
gcgcgccaggcgggttgctcatggtggacgtttgctcctactggcatgtttgaagcagac
gaggcagatacccttcccctcgactttgaagcaggacccaccccgcgtggtgatctctcc
cagattgaagagatgatgtccctgctcctagcgcatacctctgcaggtggcagagcggcc
tttatcgctcccgccaagggtgcaatcaagcgcatggtggacagattcaaagaaaaagga
atacccacaaaagtagccacacccggttgggagcctactccgggcgaagtgactctgtat
caagcactcagccacgcaggccttgtatttcctaaagtccgtaaaaaagcaggaagtgag
gcattgccccttgtcgtggtcacggagaccgatctcacgggtaatcgagtaggggacatc
gcaggggcaaaacgtcgtccagctaaacgacgcaaccgtgtagacccacttgcgctaaaa
accggtgattttgtggtccacgagacccatggcattggacgattccttaagatgaccgag
cgaacgatcacatccggggatgaaacctcgcggcgagaatacatcgtcttggaatatgca
ccggctaaacggggacaacccgcggaccaactctttgttcccatggactcccttgatcta
ctgagtaagtatgtgggaggtgaaaagcccgcgctgtccaagatgggcggctccgattgg
aagaatactaagaaaaaagctcgtgctgcggttcgggaaattgccggtgagctcgtcgag
ctttatgccaagcggcaatccgcgccgggacatccttttgcgcctgattctccctggcag
tatgagatggaagataacttcccatacgttgagaccgaagatcagatgatggctattgag
gctgtcaaagcagatatggaaaagcctgttcctatggatcgcgtgattgtaggcgacgtg
ggatacggtaagacagaagtcgctgtacgagctgcatttaaggctgttcaggatggaaaa
caagtggtggtcttggtgcccactacgttattagcgcagcagcatttgtccacattcgat
gaacgcatggctggtttccccgtgaatctgcgaggcttaagccgttttacctccacggtt
gaggcaaaggaaacgataaaagggcttgccgacggcaccgtagacattgtaatcggtaca
caccgcctgcttcagacaggaattcagtggaagaatcttgggttggtcatcgtcgatgag
gagcaacgttttggtgttgagcacaaagaacacatcaaagcgttgagaacacatgttgac
gtgttgacgatgtcggctacaccgatccctagaaccttggaaatgtcaatggctgggatc
cgggagatgtctactattttgacgcctccggaggatcgtcatcccatcctgacttatgtt
ggagcacaagaagataaacaaatcgccgcagctattcggcgcgagctgttgcgagacggc
caagtcttttttgtacataacaaagtctccgatattgaaaagaaggctagggacctacgg
gaactggtaccggaagctcgtatcgtggttgcgcatggacagatgagcgaggagcttttg
gaacaaactgttcagggcttctgggatcgcgaatttgatgtgctggtatgtaccaccatc
gtggaaaccggtttggacattgcgaatgccaacaccctcatcgtggaaaatgcgcatcat
atgggtctttctcaactgcatcagctgagggggcgcgtaggacgctcgcgggaacgcggc
tatgcctatttcctgtatcccaaggggcaaacgctgacggaaaattcttatgaccgcctg
gccactattgcccagaacaacgatttaggcgctggtatggcagtggctatgaaagacctg
gaaatgcgtggcgccggtaacgtgctcggcgcacagcaatcgggccatatcgcaggagta
gggtttgacctttatgtgagacttgtcggcgaagccgtggaagcctaccgggctctcgca
gacggaaagatcgtcgatgccaccgatgacggactaaaagaaatccgcatcgacttgcct
gtggacgcgcatatcccagagtcatacatcaacgctgaaaggcttcgacttgaggtatat
cggaagctggcggcgtcgcaaagcaatgccgatctgatactcgcagtggaggagatggag
gatcggtatggtccgctgcctgaagaagtcaaacgtctgctggcggtagctaggctacgg
cacctggccaagtcagcgggtatcagtgatattggagtgcaaggaacacggatcaagatt
catccggtggagcttcctgactctaagcaagttcggttgaagcggctgttgccttctgcg
acatatcgtgctgcggctaaagctatccagttgtcttttcctaaagaggggcgcaacgtt
actgataagccgcttcgcgacgtcgccctactccaatgggtagcagattttctgtcggaa
atgtttgaattgccgcgcatatcagttacaggggaggcagtatccgagaaaatcatctcc
gtgggggaaccccaagtttttcacgggcggactcgtgctactcagcgtgacgttacaaag
cgggtcgagcgcaacgatgatgaggactatgaggataagcgcgaagcgcgtaggaggaaa
ttccggatgcgttga
DBGET
integrated database retrieval system
