Clostridium perfringens SM101: CPR_0024
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Entry
CPR_0024 CDS
T00379
Symbol
addB
Name
(GenBank) ATP-dependent nuclease subunit B
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
cpr
Clostridium perfringens SM101
Brite
KEGG Orthology (KO) [BR:
cpr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpr03400
]
CPR_0024 (addB)
Enzymes [BR:
cpr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CPR_0024 (addB)
DNA repair and recombination proteins [BR:
cpr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
CPR_0024 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
DUF3502
DUF5906
GP17
Motif
Other DBs
NCBI-ProteinID:
ABG86087
UniProt:
Q0SWW7
LinkDB
All DBs
Position
26188..29664
Genome browser
AA seq
1158 aa
AA seq
DB search
MGLKIIYGRAGTGKSTFCINQIKKKINNSPTNKLILLVPEQFTFQTENKVLNAIGERYVL
NAEVLSFKRLAHNVFNECGGATRTIMGDAGKSMLIFKVLEDLGDNMTVFKNASRQKGFID
IASKTITEFKKYNVNNEVLDLTINEIEDENLKMKMEELKDVFNEFNSRLHEGYVDEEDQL
LLLNEKLDGCSLYDGAEIWIDEFSSFTPNQLSVIGKLLKKAKSVNITLSIDEVNSPKVES
DLFVATKNTEKRLMNLIQEEGIAFNGYINLNEDIPYRFKENKELAHIERQLYAYPFKQYR
GENNSLRLYRANNNYDEIEFVAKDILRLVREKQYRFKDISVICREVDNYEKVISAIFAEY
EIPYYIDKKIDIASNPLIVFINSAVDIISKNWTYESMFKYLKTGLIKEFRGIEGAELIDE
LENYVLAYGIKGKKWMEEWVNYSSSILKEEEISEENKQRLERLNDIRETIVTPLDEFNKE
CKGKKTLKEFAIILYEFLDSKLNIMDTIDKYVEYFKENDMAIEAKEYSEVRDIFIDVLEQ
AVDVLGNEVMDLDEFMKVLNIGLSQYEMGLIPVALDQVNIGDITRIKSRGTKALYIIGVN
DGVLPSASKEEGILSDNDREILLEKGISLASDTRTKIFEEQFLVYTAFTIAEEYLVVTYP
LADFEGKSQRPSIIVHRLKKILPNVKEESEGFKLVNDKYDKISAKIPTLNELMIAIRKNY
DGAEIDDYWKYVYDWYLREPKWKERIEYVRKGLEYTNLENNISKEKAKKLYEDNKNKISL
SVSRLERYAQCPFAYYIQYGLKAKDRKIYEFTAPDLGSFMHEILDEFTNEIKEKDLKWSD
LSKENCKNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQMKRSDFE
IYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRIDKLNLDGETYLRIIDYKTGSKKFD
LNKFYNGLQMQLLVYLDALINNSENIVENQAMPGAILYFRIDDPILKSKGDLTEEEIKSE
ILKELKLEGLLLDDVKVVKAMDNTLEPGTHSLIIPANMKKAGDLGKNKALITMEQFELLR
KYVNEKMVEICQNMIEGKIDIEPCKENKNIVCDYCNYSHICQFDSSLEDNRYKVIPKKKD
EDIWKSINEKVGGEVNGD
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgggcttaaaaattatatatggaagagctggtactggtaaaagtactttttgtataaat
caaataaaaaagaaaataaataattcacctaccaataaattaattttacttgtcccagaa
cagtttacttttcagactgagaataaagtattaaatgccataggggaaaggtatgtttta
aatgctgaggttcttagttttaaaagacttgctcacaatgtttttaatgagtgtggagga
gcaactagaactattatgggggatgctggtaaaagcatgcttatttttaaggtactagaa
gatttaggggataatatgactgtgtttaaaaatgcctctagacaaaagggctttatagac
atagcatcaaaaacaataactgagtttaaaaagtataatgttaataatgaagttttagat
ttaactattaatgaaatagaagatgaaaatctaaaaatgaagatggaagaattaaaggat
gtttttaatgaatttaactcaagacttcatgagggatatgttgatgaagaggatcaactt
ttactattaaatgaaaagttagatggatgttctttatatgatggagctgaaatttggata
gatgagtttagttcctttactccaaatcagttaagtgttataggaaaattattaaaaaaa
gctaaaagtgttaacataactttatccatagatgaggtaaattcacctaaagtggaaagc
gatctttttgtagctacaaaaaatacagaaaaaaggctaatgaatttaatacaagaagaa
ggaattgcttttaatggatatattaatttaaatgaggatattccatatagattcaaagaa
aataaggaattagcacatatagaaaggcaactctatgcatatccttttaaacagtataga
ggggaaaataatagtttaaggctttatagagcaaataataactatgatgaaattgagttt
gtagctaaggatatattaagacttgttagagagaagcaatacagatttaaagatatttca
gtaatatgcagagaggtagataattacgagaaggttatatcggcgatttttgcagagtat
gagattccttattatatagataaaaagatagatatagctagtaatccacttattgttttt
ataaactcagcagtagatataataagcaaaaattggacttatgaaagtatgtttaaatat
cttaaaactggacttattaaagagtttagagggattgaaggggcagagcttattgatgaa
ctagaaaactatgtattggcctatggaataaagggtaaaaagtggatggaagaatgggtt
aactatagttctagcattttaaaagaagaagagatatcagaggaaaataagcaaagatta
gaaagattaaatgatattagagagactatagtaactcctttagatgagtttaacaaagag
tgcaaaggaaagaaaaccttaaaggaatttgccataattttatatgaatttttagactct
aaattaaatattatggataccatagataaatatgttgagtatttcaaggaaaatgatatg
gcaattgaggcaaaggaatattctgaggtaagagatattttcatagatgttttagagcaa
gcagttgatgttctaggaaatgaagttatggatttagatgaatttatgaaagtattaaat
attggattatctcaatatgaaatgggtttaattcctgtagccttagatcaagtaaacata
ggggatataacaagaataaaaagtagaggaacaaaggctttatacattataggagtaaat
gatggggtgctcccttcagctagcaaagaagaaggaatattatcagataatgatagagaa
attttacttgaaaaagggatttcactagcttcagatactagaacaaaaatctttgaagag
caatttttagtttatacagcctttaccatagcagaggaatacttagttgttacttatcct
ttagcagattttgaaggtaaatctcaaagaccttctattatagttcatagacttaaaaag
atacttccaaatgtaaaggaagaaagtgaaggctttaaattagtaaatgataagtatgat
aagatttctgctaaaattcctactttaaatgagcttatgatagcaattagaaaaaattat
gatggtgctgagatagatgactattggaaatatgtttatgattggtatttaagagaacct
aagtggaaagaaagaatagagtatgtaaggaaggggcttgaatacactaatttagaaaat
aatatttccaaggaaaaggctaaaaagctttatgaagataataaaaataaaatttcacta
agcgtttcaagattagagaggtatgcccagtgtccatttgcttactatatacaatatgga
ttaaaggctaaggatagaaaaatatatgagtttacagcacctgatttaggtagctttatg
catgaaatattagatgagtttaccaatgaaattaaggaaaaagatttaaaatggagtgat
ttaagcaaggagaattgcaaaaacataataaattctttagttgataatcaggttaaaaat
aataagtcatccatattaaatagttcaaagagatattcttattttacagatagatttaag
agaattcttacaaaatcagttatggtaattagtgaacagatgaagagaagtgattttgaa
atttataaaaatgaattggcctttggattttctaaagatgtgaattcaataaaactagac
cttccttcaggagaaagtttttatttaaatggaagaatagatagaattgataaattaaat
ttagatggtgaaacctatttaagaattatagattataaaactggctctaaaaagtttgat
ttaaataaattttataatggacttcaaatgcaacttttagtttatttagatgcccttata
aataattcagaaaatatagttgaaaatcaagctatgccaggggcaatactttattttaga
atagatgaccctatattaaagtctaagggagatttaacagaagaagaaataaaaagtgag
attttaaaagagttaaaattagaaggtcttttactagacgacgtaaaagttgtcaaggca
atggataatactttagaacctggaacacactcccttataatacctgcaaacatgaaaaag
gcaggggatttagggaaaaataaagctttaataaccatggagcagtttgaattattaaga
aagtatgtaaatgaaaaaatggttgagatatgccaaaatatgatagaaggtaaaattgat
atagaaccatgtaaagaaaataaaaatatagtgtgtgattattgtaattactcacatata
tgccagtttgattctagtttagaagacaatagatacaaagttattccaaagaaaaaagat
gaagacatatggaagagtataaatgaaaaagtaggtggtgaagtaaatggggactaa
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