Clostridium perfringens SM101: CPR_1226
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Entry
CPR_1226 CDS
T00379
Name
(GenBank) putative ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cpr
Clostridium perfringens SM101
Pathway
cpr03420
Nucleotide excision repair
cpr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CPR_1226
03430 Mismatch repair
CPR_1226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpr03400
]
CPR_1226
Enzymes [BR:
cpr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CPR_1226
DNA repair and recombination proteins [BR:
cpr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CPR_1226
MMR (mismatch excision repair)
Other MMR factors
CPR_1226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
Viral_helicase1
UvrD_C_2
DEAD
AAA_30
ResIII
AAA_22
AAA_11
AAA_16
CarD_TRCF_RID
CFAP77
CBFD_NFYB_HMF
DUF4334
ERF
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ABG86390
UniProt:
Q0STK9
LinkDB
All DBs
Position
complement(1377730..1379724)
Genome browser
AA seq
664 aa
AA seq
DB search
MSNLDKYQNEAVRARSKSVLVIAPPGAGKTTVILNRIKYLLEERKVKGIHVIVITFTKAA
AENMKSRFKEMHKEGVVPFFGTFHGLFYKILLRNKDEIRLIESKDSYNIIRKVLSSYIEE
VSDEKIKEVLNNISRKKVSSKDLEISMTYDIFDKCYEAYETFKNERGLLDFDDLQIKAVT
LLKENPHILGYYRNLIKYILVDEFQDCDEVQLEFLRLINNEVFCVGDEDQSIYSFRGATP
KCMINFEENFEGSEKVYLKYNYRSLKNIVEVSKDVIKHNKERYQKEIIAFNENQGKIELK
KPFNESEEANIIALKIEESKRLGNKYSDTAILYRTNMESRSFIDAFIRKKIPFKLLDKEY
NFFNHFICRDLIAYLRLSIDSFNKEDFSKIINKPFRYVSKSAIYGVMNSKKKENVFDILM
NVEGVHPFQMRKFEELKSDIAYLNKISLNSAIDFILSDLEYSQYIREYSSKFKQNQEDLL
DIVEEFKSSAMEFKSIITFLSHIESVEENLENLNSKGNIDSVILSTMHGVKGMQFNDVHI
VNIVDETIPHKNSMENLEEERRLFYVGITRAINNLYLYAPKSVRGKFKDPSIFLNNTNLD
SQCNITDYGLKEGDAIRHNYFGIGEILKIEKDTISIKFIQGENKKFSLRTLIENNLIEKI
ICEV
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatttagataaatatcaaaatgaagctgtaagagcaaggagtaaaagtgttctt
gttatagctccaccaggagcaggaaagaccacagtaatattaaatagaattaaatatctt
ttagaagaaagaaaggttaaaggaatacatgttatagtaataacttttactaaggcggca
gcagaaaatatgaaaagtagatttaaagaaatgcataaggaaggtgttgttccattcttt
ggaacctttcatggacttttttataaaattttacttagaaataaggatgaaataaggctt
atagagtctaaggattcttataatattataaggaaagtattatcctcttatatagaagag
gtaagtgatgaaaaaataaaagaagtattaaataatatatctagaaagaaagtttcttct
aaggatttagaaatatcaatgacttatgatatttttgataaatgctatgaagcatatgaa
acttttaaaaatgagagaggacttttagattttgatgatttacaaataaaagcagtaact
cttttaaaagaaaatcctcatatattaggatattatagaaatttaataaaatatatatta
gttgatgagtttcaagattgtgatgaagttcaattagaatttttaagacttataaataat
gaagttttttgtgttggagatgaggaccaaagtatatattcctttagaggagcaactcct
aaatgtatgataaactttgaggagaactttgaaggtagtgagaaggtttatttaaaatat
aattatagaagcttaaaaaatattgtggaggtatctaaggatgttataaagcataataaa
gagagataccaaaaagaaataatagcttttaatgaaaatcaagggaaaatagaacttaaa
aagccctttaatgagtctgaggaagcaaatataattgctttaaaaatagaagaaagcaaa
agattagggaataaatattctgatactgctattttgtatagaacaaatatggagagtaga
agttttattgatgcctttattagaaaaaagattccctttaagcttttagataaagagtat
aatttctttaatcattttatatgtagagatttaattgcatatttaagactctcaatagat
tcatttaataaagaagattttagtaaaataataaacaaaccctttagatatgtttcaaaa
agtgctatttatggagtgatgaattctaagaagaaagaaaatgtttttgatatattaatg
aatgtggaaggcgtacatccatttcaaatgagaaagtttgaggagctaaaaagtgacata
gcttatttaaataaaatttccttaaatagtgctattgattttatattaagtgatttagag
tatagtcagtatatacgagagtattcctctaaatttaagcaaaatcaagaggatttatta
gatattgtagaagaatttaaaagttcagctatggaatttaaatctataatcacttttctt
tctcacatagaaagtgttgaagaaaatttagaaaacttaaattctaaaggcaatatagac
tctgttatattaagcaccatgcatggggtaaagggaatgcagtttaatgatgttcatatt
gtaaatatagtagatgaaacaataccacataaaaatagtatggaaaatttagaagaggag
agaagacttttttatgtgggtataactagagccataaataatttatatctttatgcacct
aaaagtgtaagaggtaaatttaaggatccatctatatttttaaataatacaaatctagat
agccaatgtaatataacagattatggattaaaggaaggagatgccataagacataattat
tttggcataggtgaaattttaaaaatagagaaggatactatttcaattaaatttattcaa
ggagaaaataaaaaattttctttgagaactttgattgaaaataatttaattgaaaaaata
atttgtgaggtttaa
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