Clostridium perfringens SM101: CPR_1389
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Entry
CPR_1389 CDS
T00379
Name
(GenBank) ATP-dependent RNA helicase, DEAD/DEAH box family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cpr
Clostridium perfringens SM101
Pathway
cpr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPR_1389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpr03019
]
CPR_1389
03009 Ribosome biogenesis [BR:
cpr03009
]
CPR_1389
Enzymes [BR:
cpr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CPR_1389
Messenger RNA biogenesis [BR:
cpr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CPR_1389
Ribosome biogenesis [BR:
cpr03009
]
Prokaryotic type
rRNA helicases
CPR_1389
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
NDK
Motif
Other DBs
NCBI-ProteinID:
ABG87498
UniProt:
Q0ST49
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All DBs
Position
1560826..1562412
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AA seq
528 aa
AA seq
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MNNIKFDDLGLKESLLKAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGC
AIINNADFSGKKKSPKALILAPTRELAIQVNEELVRLGKHEKLSVLPIYGGQPIDRQIRA
LKNGVDIVVGTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDR
QTLLFSATMPPQIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRDRFETLCRVL
DFDEPNAAIIFCKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEGSLDFLV
ATDVAARGIDVESVTHVINYDLPQDNESYVHRIGRTGRANREGVAYSLVTPKEYMMLKQI
QKHTKSKIIRKAVPTVDEIFQNKHNNIINNVKSTIEEASEDFQKFIPIATQLDEDYSLVD
VAAALLKIVFDKESSFDYTSNSIEAPVMDETRLFMSVGRRDGITPKSLVNFLKETARISP
KQVGDIDIKENFCFANVDADAVNNIMKKSMGKKLNKRTVNIEVAKKRK
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatataaaatttgatgacttaggtcttaaggaaagcttacttaaagctataaaa
gatatgggatttgaagagccatctcaaatacaagctgaaagtattcctgtagccctagaa
ggacacgatataatcggtcaagctcaaactggtactggtaaaacagctgcttttggatgc
gctataataaataatgctgatttttcaggaaagaagaaatcaccaaaagcacttatttta
gcaccaactagagagcttgctatacaagttaatgaagaacttgtaagacttggaaaacat
gaaaaactttctgttttaccaatatatggtggtcagccaatagatagacaaattagagct
ttaaaaaatggtgttgatatagttgttggaacacctggtagagtgttagatttaataaga
agaaagagtttacctcttaacgatataggattcctagtgttagatgaagctgacgaaatg
ttaaacatgggattcatcgatgatttagaagaaattgttaaatcattaaaaactgataga
caaacacttttattctctgctactatgcctccacaaataaagaaattagctagaaattac
atgaaagaagatactaagcatatcgcaataaagaaaagttctttaacagtttcaaaaata
gaacaattttattttgaaataaaacatagagatagatttgaaacactttgtagagtttta
gattttgatgaaccaaatgctgcaataattttctgcaaaacaaaaaaaggtgttgacgaa
gttgtagaaaaaatgcaagctagaggatatatggttgaaggtatgcacggagatatgagc
caaaaccatagacttcaaactttaagaaaattcaaagaaggaagcttagatttcttagtt
gctactgatgttgcagctagaggaatagatgttgaaagcgtaactcacgttataaactac
gatctaccacaagacaatgaaagttatgtacatagaatcggaagaacaggtagagctaat
agagaaggagttgcctattctttagttactccaaaagaatatatgatgcttaagcaaata
caaaagcatactaagagtaaaataataagaaaagctgtacctacagttgatgaaatattc
caaaataaacataataacataataaataatgtaaaatctactatagaagaagcttcagaa
gatttccaaaagtttattccaatagctactcaactagatgaggattatagcttagtagat
gttgcagctgctcttttaaaaatagtatttgataaagaatcttcttttgattacacttca
aattctatagaagctcctgtaatggacgaaactagattatttatgtctgttggaagaaga
gatggtataactcctaaatctcttgttaacttcttaaaagagactgctagaataagccct
aagcaagttggagatatagacataaaagaaaacttctgctttgctaatgttgatgctgat
gcagtaaataatataatgaaaaaatcaatgggtaaaaaacttaacaaaagaactgttaat
atagaagttgctaaaaaaagaaaataa
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