Clostridium perfringens SM101: CPR_1663
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Entry
CPR_1663 CDS
T00379
Symbol
polC
Name
(GenBank) DNA polymerase III, alpha subunit, Gram-positive type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
cpr
Clostridium perfringens SM101
Pathway
cpr03030
DNA replication
cpr03430
Mismatch repair
cpr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cpr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CPR_1663 (polC)
03430 Mismatch repair
CPR_1663 (polC)
03440 Homologous recombination
CPR_1663 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpr03032
]
CPR_1663 (polC)
03400 DNA repair and recombination proteins [BR:
cpr03400
]
CPR_1663 (polC)
Enzymes [BR:
cpr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CPR_1663 (polC)
DNA replication proteins [BR:
cpr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CPR_1663 (polC)
DNA repair and recombination proteins [BR:
cpr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CPR_1663 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
HHH_6
Rv2179c-like
tRNA_anti-codon
RNase_H_2
DEDDh_C
DNA_pol3_a_NI
HHH_3
YhfH
Zn_ribbon_8
Rotamase
Motif
Other DBs
NCBI-ProteinID:
ABG85807
UniProt:
Q0SSC9
LinkDB
All DBs
Position
complement(1855760..1860109)
Genome browser
AA seq
1449 aa
AA seq
DB search
MSNEFVKQINRSIKSDDNLNDLEFEITKFQLLKKSNTLRTIIKSKDQLSEEQKKIIKQYI
KKAIGFEINIEIMYYIDISDITLKQVVDQHWSHVCEKIIEKHPVLKEVLLNSPIVIEGEK
IIIKNGSEFLCTFVNKKHIDREIKGYIKSFFGINSLVEVKYDESLANKNYNDEKLNENKE
IAKKVIETMKAQAAQEKPVKKESSDNKHKSNGGNKGGYEKKSYKDEPKNENTILGRNIQG
DTIDISSIDMGSGIVTISGDVFKTDIFETKTGRIILTFFITDYTSSIAVKCFLRDKDKEH
VLENVKKGLYCKVRGEATMDPYAKEVVIMARDINKLTKIERMDTAEEKRVELHMHTTMSS
MDAVTAASKIVERAAKFGHKAVAITDHGVVQAFPDAQIAAKKNNIKVIYGVEGYLADNGT
PIVINGHEESFDDEYVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVDSFSTFVDPKVNIP
YKITELTSITQNMVNGQPTIDEVLPKFMEFVGNSVLVAHNAAFDVGFIKKNLMDMGKTLK
NPVMDTVPLARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKMKEE
MDIHDVKTLNEKYLSNIDVKKLPLHHIIILAKNQTGIKNLYKLVSMAHLDYFARRPRLPK
SIITEYREGLIIGSACEAGQLYKAVLEGKTDGELKEIASFYDYLEIQPIQNNEFLIRKGN
VKDEEELRELNRKIYDLGKEMDKPVVATCDCHFLDPNDEVFRRIIMAGQGYGDADNQPPL
YFRTTNEMMKEFEYLGEEACREVVIENTQKIADMVEAVKPIPDETFPPKIEGAEEEIRNM
TMNKVHSIYGENLPEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSLEDGYLVGSRGSV
GSSFVATMSDITEVNGLPPHYVCPNCKKSEFFLDGSISSGADLPDKNCPDCGTKYIKDGH
DIPFETFLGFEGDKEPDIDLNFSGEYQAVVHKYTEVLFGKGYVFKAGTIGTVAEKTAYGF
VKKYLQERGLVVSQAEIERLTIGCTGIKRTSGQHPGGIMVVPNDNEIYNFCPIQHPADDV
NTDIITTHFDYHSISGRLLKLDILGHDDPTVLRMLQDLTGLDPKTIPLNDPKVISLFTSP
DALGVTKEELGCEVGSYGLPEFGTKFVRQMLVDTQPKSFADLVRISGLSHGTDVWLNNAQ
YFIKEGYTTLKDCIATRDDIMVYLMYKDLPPKTAFTIMEKVRKGKGLSEEDEALMREKNV
PDWYIESCKRIKYMFPKGHAVAYVMMAVRIAYYKVYYPEAYYTTYFTVRADDFDADLICK
GEEAIKAKMEELNSLGNNISVKEKGLLTILEISYEMYKRGLNFLKVDLYKSEATKFKIEE
DGIRPPLNALQGVGDNAAKSIVECRVNGEFISKEDLRIRSKVSKTVIETLDNHGCLEGMQ
ESNQLSLFG
NT seq
4350 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaacgaatttgttaaacagattaacagatccataaaatcagatgataatcttaat
gatttagagtttgaaataactaagtttcaattattgaagaaaagcaatactttaagaacc
ataataaaaagtaaagatcaattatcagaagaacaaaagaaaataattaagcaatatata
aaaaaagctataggttttgaaataaatatagagattatgtattacatagatatttctgat
ataactttaaaacaggtagtagatcagcattggagtcatgtttgtgaaaaaattatagag
aaacatcctgttttaaaagaagttttacttaattctcctatagtaattgaaggagaaaaa
ataattataaaaaatggttctgagtttttatgtacttttgttaataagaaacatatagat
agagagattaagggatatataaaatcattctttggaataaattctttagtagaagttaaa
tatgatgaaagtttagctaataagaattacaatgatgaaaagttaaatgaaaacaaagaa
atagctaaaaaagttatagaaactatgaaagcccaagctgctcaagaaaagcctgttaag
aaggaaagtagcgataataaacataaatctaatggtggcaataaaggcggttatgagaaa
aaatcttataaagatgagcctaagaatgaaaatactatacttggaagaaatattcaagga
gatactatagatataagcagtatagatatgggctctggaattgttactatttcaggggat
gtatttaaaactgatatttttgaaactaagacaggtaggataatacttacattctttata
acagactatacaagttccatagccgttaaatgcttcttaagagataaggataaagaacat
gttttagaaaatgttaaaaaaggtctttattgtaaagtaagaggagaagctactatggat
ccttatgctaaggaagttgtaataatggctagggatataaataagcttacaaaaatagag
cgtatggatacagcagaggaaaaaagagtagaacttcatatgcatacaactatgagctca
atggatgccgtaactgctgcaagtaaaattgttgagagagcagcaaagtttggacataag
gctgtagccataacagaccatggagttgttcaggcctttccagatgctcaaatagctgct
aaaaagaataacataaaagttatttatggggtagagggatatttagcggataatggaaca
cctatagttattaatgggcatgaggaatcctttgatgatgagtatgtggtttttgatata
gaaaccacagggttttcaagtaaaaatgataagattatagaaattggtgctgttaagtta
aaggatggagaaatagtagattcatttagtacttttgttgatccaaaggtaaatattcca
tataagattacagagcttacaagtataactcaaaatatggttaatggacagcctactata
gatgaagtgcttcctaaatttatggagtttgtaggaaattctgtattagtagcccataat
gctgcctttgacgttggttttataaaaaagaacttaatggatatgggaaaaactttaaag
aatcctgtaatggatactgttcctttagctagatatctttatccagatttaaaaaaggtt
aagttaaatctagttgctaaacatttaggaattagccttgaaaatcaccatagagccgtt
gatgatgcaaaggctactgcggagatattaaagttttctttcaaaaagatgaaagaagaa
atggatattcatgatgttaaaactctaaatgaaaagtatttatcaaatatagatgtaaag
aaacttcctctacatcacataataatattagctaaaaatcaaactggaattaagaattta
tataaattagtttctatggctcacttagattactttgctagaaggccaagacttcctaaa
agtataataactgagtatagagaaggattaataattggttcagcttgtgaagcagggcaa
ttatataaggcggttttagaaggcaagacagatggggaattaaaagaaatagcatctttt
tatgactacctagaaattcagccaatacaaaataatgaattccttataagaaaaggaaat
gtaaaggatgaagaagagcttagagagttaaatagaaaaatatatgatttaggaaaagaa
atggataaaccagtagttgctacatgtgattgtcatttcttagatcctaatgatgaagta
tttagaagaataataatggctggtcaaggatatggagatgcagataatcaaccaccttta
tattttagaactactaatgaaatgatgaaagagtttgaatatttaggagaagaagcttgc
agggaagttgtaatagaaaatactcagaagatagctgatatggttgaagctgtaaaacct
ataccagatgaaacattccctcctaaaatagagggggctgaggaggaaataagaaacatg
actatgaataaggttcatagtatatatggagaaaatcttcctgaagttgttcaaaagaga
ttagataaagaacttaattctataataaataatggatatgcggtgctttatcttatagct
caaaaattagttgctaaatccttagaagatggatacctagttggttcaagaggatctgtt
ggttcatctttcgtagcaacaatgtcagatataacagaggttaatggattaccacctcat
tatgtttgtccaaattgtaagaaatcagaatttttcttagatggttctataagttcagga
gcagatttaccagataaaaattgtcctgattgtggcactaagtatattaaggatggtcat
gatattcctttcgaaacattcttaggctttgaaggagataaagaaccagatatagacctt
aacttctctggagaataccaagctgttgtacataaatacacagaggttcttttcggaaaa
ggatatgtatttaaagcgggaaccataggtacagtagctgaaaaaacagcttatggtttt
gtaaaaaaatatcttcaagaaagaggattagttgtatctcaagctgaaatagaaaggctt
actattggatgtactggaataaaaagaactagtggacagcatccaggaggaatcatggtt
gttccaaatgacaatgaaatatataatttttgtccaatacaacatccagctgatgatgtt
aacacagatattataaccactcactttgattaccattcaataagtggtagacttcttaag
cttgatatacttggacacgacgacccgaccgttcttagaatgcttcaagacttaactggc
ttagatcctaagacaatacctttaaatgatcctaaggttataagtttattcacatcacca
gatgccttaggggtaactaaagaagaattaggatgtgaagttggtagttatggacttcct
gagttcggtactaaattcgttagacagatgctagtggatactcaacctaagagttttgca
gaccttgtgagaatatctggactttcacatggtactgatgtttggcttaataatgctcag
tactttattaaagaaggatatactacactaaaagactgcatagcaacaagagacgatatt
atggtttatcttatgtataaagatcttcctcctaagacagcctttactataatggaaaag
gtaagaaaaggaaaaggacttagtgaagaggatgaagctttaatgagagagaaaaatgta
ccagattggtatattgaatcttgtaaaagaataaaatacatgttccctaaaggccatgct
gttgcatatgttatgatggcagttagaatagcatattataaagtttattatccagaagca
tattacacaacatattttacagtaagagctgatgatttcgatgcagacttaatttgtaag
ggtgaagaagcaataaaggcaaagatggaagaattaaattctttaggaaataacatatca
gtaaaagaaaaagggcttttaactattttagaaatttcttatgaaatgtataaaagagga
ttgaatttcttaaaggttgatttatataaatcagaagcaactaagtttaagatagaagaa
gatggtataagacctccattaaatgcgcttcaaggagttggagataatgctgcaaaaagt
atagttgaatgtagagttaatggagaatttatttcaaaggaagatttaagaattagatct
aaggtttcaaagactgtaatagaaactttagataatcatggatgcctagaaggaatgcaa
gaaagtaaccaacttagtttatttggctaa
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