Clostridium perfringens SM101: CPR_1745
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Entry
CPR_1745 CDS
T00379
Name
(GenBank) RNA-metabolizing metallo-beta-lactamase family protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cpr
Clostridium perfringens SM101
Pathway
cpr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPR_1745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpr03019
]
CPR_1745
Messenger RNA biogenesis [BR:
cpr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CPR_1745
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
CFAP54_N
FV_peptidase
Motif
Other DBs
NCBI-ProteinID:
ABG86290
UniProt:
Q0SS47
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Position
complement(1943630..1945297)
Genome browser
AA seq
555 aa
AA seq
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MKREKLKVKIIPLGGLNEIGKNLTVIEFKDDIIVVDCGLKFPDEDMFGIDIVIPDVSYLV
KNAEKVRGIFLTHGHEDHIGALPYVLKNLNVPVYGTKLTLGIVETKLKEHGLLSTTELIR
VKPRDIIKLKSSSVEFVKTNHSIADSVAIAVHTPLGVVLHTGDFKVDYTPTDGEVMDFAR
FAELGRKGVLAMMADSTNVERPGYTMSERAVGENLKKIFIGAKGRIIIATFASNIHRIQQ
IVEAAEMTGRKIAVSGRSMENIVQVAIELGYLTIDKDSFVSIDSINKYPNEQVTIITTGS
QGEPMSALARMASSEHKKVNIIEGDTVILSATPIPGNEKLVSKVINQLFKKGAEVVYGKL
ADVHVSGHACQEELKLMQALVKPKFFIPVHGEYRHLKQHAELAVDLGLSEKNFMIAENGD
VIEITRDSIKKNGSVTSGQIFVDGLGVGDVGNIVLRDRKHLSQDGILTVVVTISKEAASV
VAGPDIISRGFVYVRESEDLMDEAKEIVKCILRDCEKKGICDWATIKSNIRDGLRSFLYE
KTKRKPMILPIIMEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtgaaaagctaaaggttaaaattatacctttaggtggtttgaatgagataggt
aagaatctaactgtaattgaatttaaagatgatataattgtagtcgactgtggacttaag
ttcccagacgaagatatgtttggtattgatatagttattccagacgtatcatatcttgtt
aaaaatgcagaaaaagttagaggaatatttttaactcatggtcatgaagatcatattggt
gctttaccatacgtgttaaaaaatctaaacgtacctgtttatggaacaaaacttacttta
ggaatagttgaaactaaactaaaagaacatggtttattaagtactacagagcttataaga
gttaaaccaagagatattataaaattaaaatcatcatctgttgaatttgtaaagactaat
cacagtattgcagattcagttgctatagcagtgcatacaccactaggagttgtacttcat
actggtgattttaaagtagactacactccaactgatggagaggtaatggactttgctaga
tttgcagaattagggagaaaaggagttcttgcaatgatggctgattctactaatgtagag
agaccaggatatacaatgtcagaaagagctgtaggagaaaatcttaaaaaaatatttatt
ggagcaaaaggaagaataataatagctacatttgcttcaaatattcatagaatacagcaa
attgttgaagctgcagaaatgacaggaagaaagattgctgtttcaggaagaagtatggaa
aatatagttcaggttgccatagaactaggatatttaactatagataaagattcttttgtt
agtatagattctataaataaatatccaaatgagcaagtgactataatcactacaggaagc
caaggagagccaatgtcagcattagctagaatggcatcttcagagcataaaaaagttaat
atcattgagggagatacagtaatactatctgcaacaccaatacctggtaatgaaaaattg
gtttctaaagttattaaccaacttttcaaaaagggagcagaggtagtctatggaaaatta
gcagatgttcatgtttcaggtcatgcttgccaagaagaattaaaacttatgcaagcgctt
gttaagcctaaattctttataccagttcatggtgaatatagacaccttaagcagcatgca
gaattagctgttgatcttggattatcagaaaagaattttatgatagctgaaaatggggac
gttatagagataactagagattcaatcaagaagaacggatctgttacttcaggtcaaatt
tttgttgatggacttggagttggtgatgtaggaaacatagttttaagagatagaaaacat
ctttcacaagacggaattcttacagtagttgttactatttcaaaagaggctgcttcagtg
gtagcaggaccagatattatatcaagaggttttgtttatgtgagagaatcagaagattta
atggatgaagctaaagagatagtaaaatgtattttaagagattgtgaaaagaaaggaata
tgtgattgggctactataaaatctaacataagagatggccttagaagtttcctttatgaa
aaaactaagagaaaaccaatgatattaccaataataatggaaatataa
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