Clostridium perfringens SM101: CPR_1975
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Entry
CPR_1975 CDS
T00379
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cpr
Clostridium perfringens SM101
Pathway
cpr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cpr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CPR_1975 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpr03021
]
CPR_1975 (rpoD)
Transcription machinery [BR:
cpr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CPR_1975 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
ABG87399
UniProt:
Q0SRH3
LinkDB
All DBs
Position
complement(2181235..2182335)
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AA seq
366 aa
AA seq
DB search
MKAKTTKAKKGEGKEKVDKMVLVKRLIDKGKKSGSLTYKEIMDELDEIELNPEQIEKIYE
VLESMGIEVISEIEQEEEEEEELDLSVPEGIAIDDPVRMYLKEIGKVPLLSSEDEIELAK
KIEEGSNYAKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYK
FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLVQELGRDPLPEELSKQ
MDMPVDKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAFTMLKEQLIN
VLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKK
LKDYLD
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctaaaacaacaaaagcaaaaaaaggtgaaggtaaagaaaaagttgacaaaatg
gtcttagtaaaaagacttatagataaaggtaaaaaaagcggttcattgacttacaaggag
ataatggatgagcttgatgaaatagaattaaatccagaacaaatagagaaaatctatgag
gttctagaatcaatgggtatagaggtcataagtgaaatcgagcaagaagaggaagaggag
gaagaattagatctttctgttccagaaggtattgctattgatgaccctgtaagaatgtac
ttaaaagaaataggtaaagttccactattatcatcagaggatgaaatagagcttgctaaa
aaaatagaagaaggaagcaactatgctaagaaaaaattagcagaggctaacttaagactt
gttgtaagtatagctaaaagatatgttggtagaggaatgttattcctagatcttatacaa
gaaggtaatttaggtcttataaaggctgttgaaaaatttgattacagaaaagggtataag
ttctcaacatatgctacatggtggataagacaggcaataactagagctattgctgaccaa
gcaagaactataagaataccagttcatatggtagaaactataaataagcttataagaata
caaagacaattagttcaagagttaggaagagatccattaccagaggaattatcaaaacaa
atggatatgccagtagataaggtaagagaaatcttaaaaatagctcaagaaccagtttca
ttagaaactccaattggtgaagaggaagattcacatttaggtgactttataccagatgat
gatgctccagcaccagcagaggcagcagcatttacaatgttaaaagaacaattaataaat
gttttagatactttaactcctagagaggaaaaagtattaagattaagatttggattagat
gatggaagagctagaactcttgaagaagttggtaaagaattcaacgtaactagagagaga
attagacagattgaagcaaaagctttaagaaaattaagacatccaagtagaagtaaaaag
ttaaaagattatttagattag
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