Clostridium perfringens SM101: CPR_2036
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Entry
CPR_2036 CDS
T00379
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cpr
Clostridium perfringens SM101
Pathway
cpr03410
Base excision repair
cpr03430
Mismatch repair
cpr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cpr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CPR_2036 (recJ)
03430 Mismatch repair
CPR_2036 (recJ)
03440 Homologous recombination
CPR_2036 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpr03400
]
CPR_2036 (recJ)
DNA repair and recombination proteins [BR:
cpr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CPR_2036 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CPR_2036 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CPR_2036 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ABG86982
UniProt:
Q0SRB2
LinkDB
All DBs
Position
complement(2248456..2250234)
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AA seq
592 aa
AA seq
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MREQWLLKQRKRDEIENLKEELNIDLLTSILLVNRNIKDEKDAREFLFGGIENLNDPYLM
KDMEKGVKRVKEAIEKGDKITIYGDYDCDGVSSTSILYKGLKRCNANFNYHIPDREDEGY
GMNSKRVKILNEEGTKVILTCDNGIAAFEEIDLAEKLGMDVILTDHHDIPLVKDENGEIN
KEIPKAYAVINPKQEDCNYPFKSLCGAGIAFKFICALYKELGIPQEEALELLEICAIATV
CDVVDLLGENRIIVKNGLEMLNNTKNKGLIALKKYTGLEGKEMAQYHLGFVIGPCINATG
RLETADLSVELLLAEDDERADALAKELFELNQRRQELTKDSVDMVIKQIEDNNMENDNVI
LVYNPYIHESIAGIVAGRIKEKYNVPTIIMTKGKDMPKGSARSIEEYNIFEELSKCKELI
SKFGGHPMAAGLSVEEKNIPLLRNMLLENCKLTDYDIIPKVRIDVKLPLESLNYGLVDSL
DKLEPFGKGNSSPLFGEKDVKVSRVWIMGKEQNVIKFRCKLRNSYKTIDAIAFGNKVEEF
KEDFANKYGEEELLRVLDGGNCNFSIDLIYYPNINEFNGNKSIQANVKYFRL
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
gtgagagagcaatggctacttaaacaaagaaaaagagatgaaatagaaaatttaaaggaa
gaattaaatatagatttattaacatctattcttttggtgaatagaaatataaaagatgaa
aaagatgcacgtgaatttttatttggtggaattgaaaatttaaatgacccttatcttatg
aaagatatggagaaaggggttaaaagggtaaaagaagccatagaaaagggagataaaata
accatatatggagattatgattgcgacggtgtatcaagcacttcaattctttataaaggg
ttaaaaagatgcaatgctaactttaattatcacattccagatagggaagatgaagggtat
ggtatgaattctaagagagttaaaattttaaatgaagaaggcactaaggtaattttaact
tgtgacaatggaatagcagcctttgaagaaatagatttagctgagaaattaggcatggat
gtaatattaacagatcatcatgatattcctttagttaaagatgaaaatggagagataaat
aaagaaattccaaaggcttatgctgttataaatcctaaacaggaagactgtaattatcca
tttaaatccctatgtggagcaggaattgcctttaaatttatatgtgcattatataaggaa
ctagggattccacaggaggaagctttagaattattagagatttgtgccattgctactgtg
tgtgatgtagttgatctattaggcgaaaatagaataatagtaaaaaatggtttagaaatg
cttaataatactaaaaataaggggttaatagccttaaagaaatatacaggtcttgaggga
aaggaaatggcacaatatcatttaggatttgttataggcccttgtataaatgctactgga
agacttgaaacagctgatttatctgttgaattgcttttagctgaagatgatgaaagggca
gatgctttagctaaggagctttttgaacttaatcaaagaaggcaggaattaactaaagac
agcgttgatatggtaataaagcaaatagaagataataatatggaaaatgacaatgttatt
ttagtttataatccttatatacatgaaagtattgctggaattgtagcagggagaataaaa
gaaaaatataatgttcctacaataataatgactaagggaaaagatatgcctaagggatct
gcaaggtctatagaagaatataatatttttgaggaattatcaaaatgtaaagagctaata
agcaaatttggaggacatccaatggctgcgggtttatctgtagaagaaaaaaacatacct
ttattaagaaatatgttattagaaaactgtaaattaacagattatgatataataccaaag
gttagaatagatgttaaattacctttagaaagtttaaattatggattagtagatagttta
gataagttagaaccctttggaaaaggaaattctagcccgctttttggagagaaagatgtt
aaagtaagcagggtttggataatgggaaaagagcagaatgtaattaagtttagatgtaaa
ttaagaaatagttacaaaaccatagatgccatagcctttggaaataaggttgaggaattt
aaagaagattttgctaataaatatggagaagaggaattattaagagtattagatggtgga
aactgcaactttagcattgatttaatttattacccaaatataaatgaatttaatgggaat
aaatctattcaagctaatgtaaaatactttagattataa
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