Collimonas pratensis: CPter91_0542
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Entry
CPter91_0542 CDS
T04306
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
cpra
Collimonas pratensis
Pathway
cpra02020
Two-component system
cpra02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cpra00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CPter91_0542 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CPter91_0542 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpra03021
]
CPter91_0542 (rpoN)
Transcription machinery [BR:
cpra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CPter91_0542 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_IclR
Xre-like-HTH
Motif
Other DBs
NCBI-ProteinID:
AMP02937
UniProt:
A0A127PYS0
LinkDB
All DBs
Position
complement(558509..559990)
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AA seq
493 aa
AA seq
DB search
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQILSDNPMLERVDDPLDNSVRL
LADGAISGTASTMEAPTGDSEVSSSPTESEASLETPAAADSSSDNSDSDWSFDDISRSAK
SSDDEDARPQLEAHESTLREHLLQQMREAMRDLRDRALVELVIDALDDNGYLEESLEEIL
ERLPPELEIALEELSMALKMVQSFDPAGVGARNAPECLGLQIKRFVKVPFVTRRLALAIV
QEHLVLFAQRDFNKIKKALDCDDEDLREAQTVIKQCNPHPGAPFAGNASDYVVPDVIVRR
SKQGWQVMLNNDVMPRLRVNVLYANILKQSKGDGALTSQLQEAKWLIKNMRQRFDTILRV
AQAIVERQRNFFSHGAVAMRPLVLREIADTLGLHESTISRVTTQKYMLTPHGMFELKYFF
GSHVATEAGGEASSTAIRALIKQLIGAEDSRNPFSDSKIADMLAEQGMVVARRTVAKYRE
ALKIPSVNLRKAL
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaatcactccagctacgcacctctcaacatcttgcgctgacgcctcagctgcag
cagtcgatccgcctgctgcagctgtccacgctcgagttgcatcaggaactggaacagatc
ctgtcggacaatccgatgctcgaacgggtcgacgatccgctcgacaattcagtgcggctg
ctggcggacggcgccatcagcggcaccgcgtcgaccatggaagcgcctaccggcgacagc
gaagtcagcagctcgccgaccgagagcgaagccagcctggaaacgccggcagccgccgac
agcagctctgacaatagcgacagcgattggagtttcgacgatatctcgcgcagcgcgaaa
agctcggacgatgaagacgcgcggccgcagctggaagcgcatgaatcgacgctgcgcgaa
catctgctgcagcagatgcgcgaagccatgcgcgacttgcgcgaccgcgcgctggtcgag
ctcgtgatcgatgcgctggacgataacggttacctggaagagtcgctggaagaaatcctg
gagcgtttgccgcctgagctggagatcgccctcgaagagctgtcgatggcgctgaagatg
gtgcagagcttcgatccggccggggtcggcgcgcgcaacgcgccggaatgcctgggcttg
cagatcaagcgttttgtcaaagtgccattcgtcacgcgccgcctggcgttggcgattgtg
caagaacatctggtgctgtttgcgcagcgcgatttcaataaaatcaagaaagccctggat
tgcgacgacgaggacctgcgtgaagcgcaaaccgtcatcaagcagtgcaatcctcatccc
ggcgcgcccttcgctggcaacgcctccgactatgtggtgccggacgtgatcgtcaggcgc
agcaagcaaggctggcaggtgatgctgaacaatgacgtcatgccaagactgcgggtaaat
gtcctgtatgccaacattctcaagcaaagcaagggcgacggcgcactcacttcgcagcta
caggaagccaagtggctgatcaagaatatgcggcagcgcttcgacaccattttgcgcgtt
gcacaagcgattgtagaacgtcaaaggaacttcttttcccacggcgcggtcgccatgcgc
ccgcttgtgttgcgtgaaatagctgatacactgggtctacacgagagtactatttcacgt
gtgaccactcagaaatacatgctcactccccacgggatgtttgaactaaagtatttcttc
ggcagccatgttgctactgaggcaggtggagaggcttcctcaacagcaatcagggcactc
attaagcaactcataggagcggaagattcaagaaatcctttctctgacagcaagattgcc
gacatgcttgcggaacaaggtatggtggtcgctcgccgcaccgtcgcaaaatatcgcgaa
gcactaaaaattccgtctgttaatctgcgcaaggccttgtag
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