Collimonas pratensis: CPter91_0910
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Entry
CPter91_0910 CDS
T04306
Name
(GenBank) RNB domain protein
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
cpra
Collimonas pratensis
Brite
KEGG Orthology (KO) [BR:
cpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cpra03016
]
CPter91_0910
Enzymes [BR:
cpra01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CPter91_0910
Transfer RNA biogenesis [BR:
cpra03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CPter91_0910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
SH3_YKFC_2nd
Myosin_N
Motif
Other DBs
NCBI-ProteinID:
AMP03298
UniProt:
A0A127PZS6
LinkDB
All DBs
Position
935490..937589
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AA seq
699 aa
AA seq
DB search
MNLFFEESGDFKAGVVLSQQGEAYQVELPTGKRSKVKAKDVLLQFTAPTPQELLDEAKQI
AQAMELDFLWEVAGQEEFGFAELGAEYFGHAPLPVEAAGLLLSLHTAPIYFYKKGKGRYK
AAPETSLKAAQAGIEKKRQQALIQAGYVDQLKAGELPEVMKPLAPQLLFKPDKNSLEYKA
LEAACNELQTSPQRLMLAVGGIASPKQLHLSKFLLEFFPKGSGFPKIAIPAVAELPLAQV
QAFSIDDVTTTEIDDALSVQTLADGNVRIGIHIAAPGLGIKRGDALDAIARARMSTVYMP
GDKITMLPDELVEAFTLAEGKNCPALSLYATLNPADWSLVSTETKAELVPISANLRHNTL
DELVTEENLANDAGDYPHKADIAVLWKWIQVLEQGRMAKREGFGLRPEQNNRVDFNFYVE
DDVVTIARRKRGAPLDKIVAELMIFANSSWGKLMSDHGVPGIYRVQGGGSGGWAAKMQVR
MVTHAAPHQGLGVDQYAWSTSPLRRYTDLVNQWQILACVEGGVAAPLVAPFKPRDADLFA
IVSGFDAAYSGYGDFQSNMERYWCLRWLGQEQARQVEAAVLKDEILRLAEIPLIIKLPGM
QQLARGTQVKLDIIRWDEVDLTVEARLLEVSAPPEGQQLAEPDEEEELAAELDAAMDMPH
ESVEAELEAVADNEAVVAAADDESATDESTTEESKPATE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgaatctattttttgaagagtccggcgactttaaagcgggtgtcgtactgtcgcagcaa
ggcgaggcctaccaggtcgaactgccaacgggcaaacgcagcaaggtcaaagccaaggac
gtgctgctgcaatttacggcaccgacgccgcaggagctgcttgatgaagcgaagcagatc
gcgcaagccatggagctcgatttcctgtgggaagtcgcgggccaggaagaattcggcttc
gccgaactgggcgccgagtatttcggccatgctcccttgccggtagaagcagcgggtttg
ctgctgagcctgcacaccgcgccgatctatttttacaagaagggcaagggccgctacaag
gccgcgccggaaacatcgctgaaggcagcccaggcgggcatcgaaaagaaacgccagcaa
gcattgatccaggctggctatgtcgaccagctcaaagccggtgagctgccagaggtgatg
aagccgctggcgccgcaactgctgttcaagccggacaagaacagcctggaatacaaggcg
ctggaagcggcctgcaacgaattgcagacctcgccgcagcgcctgatgctggcggtcggc
ggcatcgcttcgccgaagcagctgcatctgtccaagttcctgttggaatttttccccaag
ggttccggctttcccaagatcgccatcccggcggtggccgagttgccgctggcgcaggtg
caggccttctcgatcgatgacgtcaccaccaccgagatcgacgatgcgctgtcggtgcag
acgctggcggacggcaatgtccgcatcggcatccatatcgccgcgccgggcctcggcatc
aagcgtggcgatgcgctggatgcgatcgcgcgcgcgcgcatgtcgaccgtctacatgccg
ggcgacaaaatcaccatgctgccggatgagctggtggaagcgttcaccctggccgaaggc
aagaactgcccggcgctgtcgctgtacgccaccctgaatccggccgactggagcctggtc
agcaccgaaaccaaggccgagctggtgccgatttcggccaacctgcgccacaacacgctg
gacgaactggtcaccgaggagaatctggctaacgacgccggcgactatccgcacaaggcc
gatatcgccgtgttgtggaaatggatacaggtgctggaacaaggccgcatggccaagcgc
gaaggcttcggcttgcggccggagcagaacaatcgcgtcgatttcaatttctatgtcgag
gacgatgtcgtcaccatcgcccgccgcaagcgcggcgcgccgctcgacaagatcgtcgcc
gagctgatgatcttcgccaacagcagctggggcaagctgatgtcggaccacggcgtaccc
ggcatctatcgtgtccagggcggcggcagcggcggctgggctgccaagatgcaggtgcgc
atggtgacgcacgccgcgcctcaccaaggcctgggtgtggatcaatacgcctggagcact
tcgcctttgcgccgctacactgacctggtcaaccagtggcagatcctggcttgcgtcgaa
ggcggcgtcgccgcgccattggtggcgccgttcaagccgcgcgatgccgatctgtttgcg
atcgtctccggctttgacgctgcgtattccggttatggcgacttccagtcgaacatggaa
cgctactggtgcttgcgctggctgggccaggaacaggcgcgccaggtggaggctgcggtg
ctgaaggatgaaatcctgcggctggcagagatcccgctgatcatcaaattgcccggcatg
caacaactggcgcgcggcacccaggtcaagctcgacatcatccgctgggatgaggttgat
ctgacggttgaggcgcgcctgctggaagtgtcggcgccgcctgagggccagcagttggcc
gagccggatgaagaagaggaactggcagcggaactggatgccgccatggacatgccgcac
gagagcgtcgaagccgagctggaagccgtagccgacaacgaagcagtggtggcggccgct
gatgacgagagtgcaactgatgagagtacgactgaggagagcaaaccggcaacggagtga
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