Collimonas pratensis: CPter91_0923
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Entry
CPter91_0923 CDS
T04306
Name
(GenBank) FAD binding domain of DNA photolyase family protein
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
cpra
Collimonas pratensis
Brite
KEGG Orthology (KO) [BR:
cpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpra03400
]
CPter91_0923
Enzymes [BR:
cpra01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
CPter91_0923
DNA repair and recombination proteins [BR:
cpra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
CPter91_0923
Prokaryotic type
CPter91_0923
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
AMP03311
UniProt:
A0A127PZT1
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All DBs
Position
complement(954496..955983)
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AA seq
495 aa
AA seq
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MPQFEKSLVWFRRDLRVFDHAALHHALKASKTVFCAFVFDTDILQPLLDAGLTADRRLEF
IRDSIVELDLELRKLGGALIVRHGSAADVIPTLARQLDINAVFSNRDYEPQARQRDAAVA
STLAAAGCGWQSFKDQVIFEQDEILTLSGQPFSVFTPYKNAWMKKLATADGPFFLQPYQI
EKYAARLAPPPAQPGKIPGLAELGFRETNLRTLKITPGMSGATALLENFLPRIGNYEEAR
NFPALKGPSYLSIHLRFGTISIRTLARAAYQALHHGAAASGAAVWLSELIWRDFYFMILY
HHPHVAQRAFKPDYDAIQWENGQHGQALFQAWCAGRTGYPLVDAAMLQLKQSGYMHNRLR
MVTASFLIKDLGIDWRWGERYFAEQLNDFDLAANNGGWQWAASSGCDAQPYFRIFNPVTQ
SEKFDTEGKFIRRYLPQLTGLGNKHIHAPWLAPAKDLQDAGIRLGENYPLPLVQHDDARK
QTLQRYAVVKKALEE
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgccccagtttgaaaaatccctggtctggttccgccgcgacttgcgcgtgttcgaccac
gccgccctgcatcacgccttaaaagccagcaaaaccgtgttttgcgcgttcgtgttcgac
accgacatcctgcagcctttgctggatgcaggcctgacggctgatcgccgcctcgagttc
attcgcgacagcatagttgaactcgacctggaactgcgcaagctgggcggcgccctgatc
gtccgtcacggcagcgccgccgatgtgatcccaaccctggccaggcagttggacattaac
gctgtgttcagcaatcgcgactacgagccgcaggctaggcaacgcgatgccgcagtcgcc
agcaccctggccgccgccggctgcggctggcaaagcttcaaggatcaggtgatttttgag
caagacgaaatacttaccctgtcaggacagccgttttccgtattcacgccttacaagaac
gcgtggatgaaaaaactggctacagccgacgggccgttcttcctgcaaccctaccaaatc
gagaaatacgccgcgcgcctggcgccgccgccggcgcaaccaggcaagatccccggcctg
gcagaacttggctttcgcgaaaccaatctgcggacattgaaaatcacccccggcatgtca
ggcgccaccgcactactggaaaatttcctgccccgcatcggcaactatgaagaagcccgc
aacttcccggcgctcaaagggccctcctatctttccatccatctgcgtttcggcaccata
tcgatccgcaccctggcccgcgccgcctatcaggcactgcatcatggcgccgctgccagc
ggcgctgcggtatggctgtcggaactgatctggcgtgatttttacttcatgattctgtat
caccacccgcatgttgcgcagcgcgcattcaagccggactacgatgccatacagtgggaa
aacggccagcatgggcaggcattgttccaagcctggtgcgccggccgcaccggctatccg
ttagtggatgcggcaatgctgcaacttaagcaaagcggctatatgcataatcgcctgcgc
atggtgaccgcctcttttctgatcaaggacctgggtatcgactggcgttggggtgagcgc
tatttcgccgaacaattgaatgacttcgacctggccgccaacaacggcggctggcagtgg
gcggcatcgtccggctgcgatgcccagccttatttccgcatcttcaatccggttacgcaa
tccgagaaattcgatacggagggtaaattcattcgccgctacctgccccagcttaccggc
ctcggcaacaagcatatccacgcgccatggctagcgccagcaaaggacttgcaggatgcc
ggtatccgcctgggagaaaattatccgctgcccttggtgcagcacgatgatgcgcgcaaa
cagaccttgcagcgttatgcggtggtgaagaaagcgcttgaggagtaa
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