Collimonas pratensis: CPter91_1135
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Entry
CPter91_1135 CDS
T04306
Name
(GenBank) helicase conserved C-terminal domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cpra
Collimonas pratensis
Pathway
cpra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPter91_1135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpra03019
]
CPter91_1135
Enzymes [BR:
cpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CPter91_1135
Messenger RNA biogenesis [BR:
cpra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CPter91_1135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AMP03519
UniProt:
A0A127Q0G5
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All DBs
Position
1179062..1180555
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AA seq
497 aa
AA seq
DB search
MPTTPSVRFADFGLSPDILRALSDQGYVHPTPIQAEAIPIVLQGRDVMGAAQTGTGKTAG
FSLPIIQLLLAHANTSASPARHPVRALILTPTRELADQVADNVKAYCRHTPLRSTVVFGG
VDIAPQTAALRSGIEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQR
IINLLPKERQNLMFSATFSGEIKKLAGTFLKNPVTIEVARSNATADNVTQTMYRVDEQTK
AQAVSFIISERKLKQVIVFSNTKIGASKLARHLENEGVKASAIHGDKTQNERMAALEAFK
QGEIEVLVATDVAARGLDIAELPCVINFDLPYNAEDYVHRIGRTGRAGASGDAISLYADK
DERLLVDIEKMIKYKFVRAELTGFVAKPSAGSERSGRRDGADGRGERSGERGERSEGRSD
SRGAASSSSRSQQHTRSAYTSTPTGGGRREKIDPWFLKPYEPTASADVPPVAAAPAGGSI
KSSKVKLAALLGGVPKG
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
gtgccaaccacgccctccgtccgttttgccgacttcgggctgtctccagatatcttgcgc
gcgctgagcgatcaagggtatgtgcatccgacgccgatccaggccgaagccattcctatc
gtgctgcaagggcgcgacgtcatgggtgcggcgcaaacggggaccggcaagaccgctggt
ttttccctgccgatcatccagttgctgctagcgcacgccaacaccagcgcctcgccggcg
cggcatccggtcagggcgctgatcctgacgccgacgcgtgaactggcggatcaggtcgcg
gacaacgtcaaggcgtattgccgtcacactcccttgcgctcgacagtggtgtttggcggc
gtcgatatcgcaccgcaaaccgcagccttgcgttccggcatcgagatcgtgattgctacg
ccgggccgcctgctggaccacgtccagcaaaagaccgtgaacctgtcgcagacgcagatc
ctggtgatggacgaagccgaccgcatgctggacatgggtttcctgccggacctgcagcgc
atcatcaacctgctgccgaaagagcgccagaacctgatgttctcggccactttctccggc
gaaatcaagaaactggcagggactttcctcaagaatccggtcaccatcgaagtcgcgcgc
agcaacgccaccgccgacaacgtcacgcaaaccatgtaccgggttgacgagcagaccaag
gcccaggcggtgtcgttcatcatcagtgaacgcaagctgaagcaggtaatcgtcttttcc
aacaccaagatcggcgcctcgaaactggcgcgtcatctggaaaacgaaggcgtcaaggcg
tccgcgatccatggagacaagacgcagaatgagcgcatggcggcattggaagcgttcaag
caaggcgagatcgaagtgctggtggcgaccgacgtcgcggcgcgcggcctggatatcgct
gaactgccttgcgtgatcaattttgatttgccgtacaacgccgaagactatgtccaccgc
atcggccgtaccggccgtgccggcgcttccggcgatgcgatttccctgtatgccgataag
gacgagcgtttgctggtcgatatcgaaaagatgatcaagtataaattcgtacgcgccgaa
ctgaccgggtttgtcgccaagccgtcggccggctctgaacgttcagggcgccgtgacggc
gccgatggccgtggcgagcgtagcggcgaacgtggtgagcgcagcgaaggccgcagcgac
agccgcggcgctgcttcatcttccagccgcagccagcagcatacgcgcagtgcctacacc
tcgacgccgaccggtggcggacgccgcgaaaaaatcgatccgtggttcctcaagccttat
gagccgacggcttcggcggatgtcccgcccgtggctgcagcgcctgcaggcggttccatc
aagtcgtccaaggttaagctggcggcgctgctgggcggcgtccccaagggctga
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