Collimonas pratensis: CPter91_1444
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Entry
CPter91_1444 CDS
T04306
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
cpra
Collimonas pratensis
Pathway
cpra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpra00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CPter91_1444
09124 Replication and repair
03420 Nucleotide excision repair
CPter91_1444
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpra03021
]
CPter91_1444
03036 Chromosome and associated proteins [BR:
cpra03036
]
CPter91_1444
03400 DNA repair and recombination proteins [BR:
cpra03400
]
CPter91_1444
Enzymes [BR:
cpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
CPter91_1444
Transcription machinery [BR:
cpra03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CPter91_1444
Chromosome and associated proteins [BR:
cpra03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
CPter91_1444
DNA repair and recombination proteins [BR:
cpra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CPter91_1444
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AMP03824
UniProt:
A0A127Q1B9
LinkDB
All DBs
Position
1496080..1498338
Genome browser
AA seq
752 aa
AA seq
DB search
MATAAAQYVVAVRALCEFTAKQGDLDLRFTPSPTAQEGITGHAVVASRRSPGYEAEVSLS
GSFGPLLVRGRADGYDPRLNRLEEVKTYRGDLGRMPDNHRHLHWAQVRIYGHLLCQSRGL
DELQLALVYYDIGSQKEMLLTEHLTADLLRQFFEDHCRRFLAWAEQEMAHRAARDLQLTA
LQFPHADFRPGQRVMAEAVYKSAVSGRCLLAQAPTGIGKTIGSLFPMLKASPGQALDKIF
FLAAKTSGRALALEAVTRIRHSAPALPLRVLELVARDKACEHPDKACHGESCPLAQGFYD
RLPQARSAAIEAGALDRESLRRVAAEHRVCPYYLSQEMASWSDVIVGDYNYYFDISAMLY
GMASVNQWRVGVLVDEAHNMIDRARKMYSAEMEYGQLKALRRNAPPALKRGLDRVSKQWN
SLGKEQEGDYLHYAEIPDAFVGALLQAVADITEYTVEHPAAMDSHLQQFYFDALHFTRMA
ELFGPHSLFDITRQSGQGSTLCIRNIVPAPFLAPRFAAARSTVMFSATLSPWHFYSDTLG
MPADTAWIDVPSPFTADQLQVQLATGISTRFQHRERSLAPIVELIAHQYRQQAGNYLMFF
SSYDYLEKVATLCAAQHPEIPLWLQARRMDEREREDFLARFTESSQGVGFAVLGGAFAEG
IDLPGARLIGAFIATLGLPQINPVNEQIMRRMGETFGNGYDYTYLYPGMQKVVQAAGRVI
RTQQDRGVVYLIDDRFARPEVRQLLPAWWHVA
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atggccacagccgctgcgcaatatgtggtcgccgtgcgcgcgctgtgcgaattcacggcc
aagcagggcgatctcgacttgcgcttcacgccttcgcccacggcgcaggaaggcatcacc
ggccatgccgtggtggcgtcgcgtcgttctcctggctatgaagcggaagtcagcctgagc
ggcagcttcggccccttgctggtgcgcggccgcgccgatggctacgatccgcgcctcaac
cgcctggaggaggtcaagacctatcgcggcgacctcggccgcatgccggacaaccatcgc
cacctgcattgggcgcaggtccggatctacggccatctgctgtgccagagccgcggcctg
gacgagctgcagctggcgctggtctactacgatatcggcagccagaaagagatgctgctg
actgaacacctgactgccgatctgctgcggcaattcttcgaagaccattgccggcgcttc
ctggcctgggccgaacaggaaatggcgcatcgcgcggcgcgcgacctgcaactgacggcg
ctgcagttcccgcatgccgatttccgtccgggccagcgcgtcatggcggaagcggtctac
aaaagcgcggtcagcggccgttgcctgctggcgcaagcgccgaccggtatcggcaagacc
atcggcagcctgttcccgatgctgaaagcgagcccgggccaggcactggacaagattttt
tttctagccgccaagacctcgggccgggcgctggcgctggaggcggtgacgcgcatcagg
cacagcgcgccggccttgcccttgcgcgtgctggaactggtggcgcgcgacaaggcttgc
gaacatccggacaaagcctgccatggcgaatcctgtccgctggcgcaaggcttctacgac
cgcctgccgcaagcgcgcagcgcggcgatcgaggctggcgcgctggaccgcgagagcctg
cgccgggtggccgccgaacatcgtgtctgtccctattacctgagccaggaaatggccagc
tggtcggacgtgatcgtcggcgactataactactatttcgatatcagcgccatgctgtac
ggcatggccagcgtcaatcagtggcgggtcggggtgctggtggacgaggcgcacaacatg
atcgaccgtgcgcgcaagatgtattccgcagaaatggaatacggccagctgaaagccctg
cgccgcaacgcgccgccggcgctcaagcgcgggctggaccgggtcagcaagcaatggaac
agcctgggcaaggagcaggaaggcgattacctgcattatgcggaaataccggacgccttc
gttggcgcgctgctgcaggccgtggccgatatcaccgagtatacggtggagcatccggcg
gcgatggacagccatctgcagcaattctatttcgatgccttgcacttcactcgcatggcg
gaactgttcggcccgcattcgctgttcgacatcacgcgccaaagcgggcagggcagcacg
ctctgcatccgcaatatcgtccccgcgcctttcctggcgccgcgctttgctgctgcgcgc
agcacggtgatgttttccgccaccttgagcccctggcatttttacagcgatacgctgggg
atgccggccgacaccgcctggatcgacgtcccttcgccgtttactgcagaccagctgcaa
gtgcaactggcgaccggcatctcgacccgtttccagcaccgcgagcgttcgctggcgcct
atcgtcgagctgatcgcgcaccagtaccggcagcaggccggtaactatctgatgtttttc
agcagttacgactacctggaaaaagtcgccacgctgtgcgcggcacagcatccggagatt
ccgctatggctgcaggcgcgccgcatggacgagcgggagagggaagatttcctggcgcgt
tttaccgagagctcgcagggagtcggctttgcggtgctgggcggcgcctttgccgaaggc
atcgacctgccgggtgcgcgcctgatcggcgctttcatcgccacactggggctgccgcag
atcaatccggtcaatgaacagatcatgcgccgcatgggggaaaccttcggcaacggttac
gactacacttatctttatcccggcatgcaaaaagtggtgcaagctgccggccgcgtgatc
cgcacccagcaggaccgcggcgtggtgtacttgatcgacgaccgttttgcgcggccggaa
gtcaggcagctgctgccggcgtggtggcatgttgcatga
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