Collimonas pratensis: CPter91_3554
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Entry
CPter91_3554 CDS
T04306
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cpra
Collimonas pratensis
Brite
KEGG Orthology (KO) [BR:
cpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpra03019
]
CPter91_3554 (hrpA)
Enzymes [BR:
cpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CPter91_3554 (hrpA)
Messenger RNA biogenesis [BR:
cpra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CPter91_3554 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
NACHT
ABC_tran
AAA_30
SRP54
SLFN-g3_helicase
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AMP05875
UniProt:
A0A127Q7Q2
LinkDB
All DBs
Position
complement(3661937..3665842)
Genome browser
AA seq
1301 aa
AA seq
DB search
MPPIVFPEELPVSGKRAEISAALSANQVIIVCGETGSGKTTQLPKICLELGRGLHGMIGH
TQPRRIAASSTAKRIAQELNSPLGEHVGYKVRFNDTLTKGAWIKLMTDGILLAETQTDPL
LRQYDTIIIDEAHERSLNIDFLLGYLKQLLPKRPDLKVIITSATIDADRFARHFGSADGT
HTRPAPVIEVSGRLYEVEVRYRPVDNADRSGTAPANAPAAAKPNAPQSAAQRDREQRDLM
DAVVDAVDELARIGSGDVLVFLPGEREIRDAAEALRKHHPAHVEILPLFARLSAQEQERV
FKASNARRIVLATNVAETSLTVPGIRYVVDAGLARVKRYSYRNKVEQLQIESIAQSAANQ
RAGRCGRVAAGVCIRLYEEQDYLQRPKFTEPEILRSSLASVILRMKSLHLTDVETFPFIE
PPPGRAIADGYQLLQELGAVDDNNQLTKTGRQLAKLPLDPRVGRMILAALDNVCLSEMLI
IAAALSVQDPRDRPLEAQGAADLAHKKFADEKSEFLSYLKIWKWFEDAIEHKKTNRQLMD
NCRANFLSQLRLREWRDVHSQLLTIVREQGWRLNEAPATYEQLHCALLTGLLGNVGFKAD
DDPHYLGARGIKFYLWPGSHLLKKAGKWVMAAELVDTSRLYARCIAQIQPEWLEKVGAHL
LKKSYGEPRWEKRTAQVSASERATLYGLVVYSQRRINFGLINPTEAREIFIRDALVGGEF
DTRAPFFAHNQKLIREIENLEHKSRRLDVLVDDELIAAFYDKLLPADICNGITFEKWHKD
VSLQTPKLLFLNRDELMRHEAAGITTELFSKVMRVAGIEMGLSYHFEPGTPRDGVTLTVP
LYALNQVYADRCDWLVAGMLKEKVHLLLKSLPQKIRRNCVPLPDYAAGFCERIQARHVFG
HGNLLDALMADIRTETTVIARSTDFKLETLPAHHSMNFKIVDEHGRQLDMGRNLSALQDE
FGGQARESFQKLAENTVVSSDVPQVSAQVSAQQGTQKAGTGKPAAKGADAAPAKPAGQYS
MLTSWTFGELPELLEIQQGKQTLIGFPALVDKATHCDLEVFDDPNEAARIHRLGLRRLFA
LQLKEQLKFLEKNIPGLQQMGMQFIALGSQEELRDQIISAGLERACLQTPLPRNAEQFAQ
RKDEGKSRLGLLSNEIARLAGLILAEYHGLPKKLQGAKGHAQAVADIQSQLQALVGKRFI
ADNDYGNLTHFPRYLKAINVRLEKLRADPTRDGRLLAEWLQVATPWQRAQKDRGSKNSDP
KMNEFRWLLEELRVSLFAQELKTPMPVSAKRLQKVWETMQR
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
ttgccgccgattgtcttccccgaggaactgccggtttcggggaagcgcgcggaaatttct
gctgccctcagcgccaaccaggtcatcatcgtctgcggcgaaaccggctccggcaagacc
acgcagctgccgaagatctgcctggagctgggccgcggcctgcacggcatgatcggccac
acccagccgcgccggattgccgcgtcctcgaccgccaagcgcatcgcccaggaactcaat
tcgccgctgggcgaacacgtcggctacaaggtgcgtttcaacgacaccttgaccaagggc
gcctggatcaagctgatgacggacggtatcctgctggccgagacccagaccgaccccttg
ctgcgccagtacgacaccatcatcatcgatgaagcgcacgaacgcagcctgaacatcgat
ttcctgctgggctacctgaagcagctgctgcccaagcggcccgacctgaaagtgatcatc
acctcggccaccatcgatgccgaccgctttgcgcgccatttcggcagcgccgatggcacg
catactcggccagcgccggtgatcgaggtgtccggccgcctgtatgaagtcgaagtgcgc
taccgtccggtcgataatgccgatcgcagcggcaccgctccagccaacgcgcctgctgcg
gccaagccgaatgcgccgcagagcgcggcccagcgcgaccgcgaacagcgcgatctgatg
gatgccgtggtcgacgccgtcgacgagctggcgcgcatcggttccggcgacgtgctggtg
ttcctgccgggcgaacgtgaaatccgcgacgccgccgaagcgctgcgcaagcaccatccg
gcccatgtcgaaatcctgcctttgtttgcgcgcctgtcggcgcaggagcaggagcgggtg
ttcaaggcgtccaacgcgcggcgcatcgtgctggccaccaacgtcgccgaaacctcgctc
accgtgccgggcatccgctacgtagtggatgccggcctggcgcgcgtaaaacgctacagc
tacaggaacaaggtcgagcagctgcagatcgaatcgatcgcgcaatctgccgccaaccag
cgtgccggccgttgcggccgggtggcggcaggcgtctgcatccgtctgtatgaagagcag
gattacctgcagcggccgaaattcaccgagccggaaatcctgcgctcgtcgctggcttcg
gtcatcctgcgcatgaagtcgctgcacctgaccgatgtcgaaacctttcccttcattgaa
ccgccacctggccgcgccatcgccgacggctaccagctgctgcaagagctgggggcagtg
gacgacaacaaccagctgaccaagaccgggcgccagctggccaagctgccgctggacccg
cgcgtcggccgcatgatcctggcagcactggacaatgtctgcctgagcgagatgctgatc
attgcggcggcgctgtcggtgcaggatccgcgcgaccggccgctggaagcgcagggcgcg
gccgacctggcgcacaagaaattcgccgatgaaaaatcggaattcctcagctacctgaag
atctggaaatggtttgaagacgccatcgagcacaaaaaaaccaatcgccagctgatggat
aattgccgcgccaatttcctctcgcagctgcggctgcgggaatggcgcgacgtccattcg
cagctgctgacgattgtgcgcgagcagggctggcgcctgaatgaagcgccggccacctac
gagcaattgcattgcgccttgctcaccggcttgctcggcaacgtcggcttcaaggccgac
gacgatccgcattatctcggcgcgcgcggcatcaagttctacctgtggccgggttcgcat
ttgctgaagaaggcgggcaagtgggtgatggcggccgaactggtcgacaccagccgcctg
tatgcgcgctgcatcgcccagatccagccggaatggctggaaaaggtcggcgctcatctg
ctgaagaagtcgtatggcgagccgcgctgggaaaagcgcacggcgcaagtgtcggcgtcc
gagcgcgccaccttgtacgggctggtggtgtacagccagcggcgcatcaatttcggtctg
atcaatccgaccgaagcgcgcgaaatcttcatccgcgatgcgctggtcggcggcgagttc
gatacccgtgcgccatttttcgcccacaaccagaaactgattcgcgagatcgagaacctg
gagcacaagtcgcgccgcctcgacgtgctggtggacgacgaactgatcgcagcgttctat
gacaagctgctgccggccgatatctgcaacggcatcacgtttgaaaaatggcacaaggat
gtcagcctgcagacgcccaagctgctgttcctcaaccgcgacgagctgatgcggcatgag
gctgccgggatcacaaccgaactgttctcgaaagtgatgcgggtggcaggcatcgagatg
ggcttgtcgtatcacttcgagcccggcacgccgcgcgacggcgttaccctgacggtgccg
ctgtatgcgctcaaccaggtgtatgccgaccgctgcgactggctggtggccggcatgctg
aaggagaaagtccatctgctgctgaaatcgctgccgcagaaaatccgccgcaactgcgtg
cctttgccggattatgcggcaggcttctgcgaacggattcaggcccgccacgtgttcggc
cacggcaatctgctggatgcgctgatggcggatatccgcactgaaaccacggtgattgcc
cgcagcaccgacttcaagctggaaaccttgccggcccatcattcgatgaacttcaagatc
gtcgacgagcatgggcgccagctggacatgggacgcaacctgtcggccttgcaggacgag
tttggcggccaggcgcgtgaaagcttccagaagctggcggaaaacacggtggtgagcagc
gatgtgccacaagtatcggcacaggtgtcggcgcagcaggggacgcagaaagccggcacc
ggcaagcccgccgccaaaggagcggacgccgcgccagccaagccagcaggccagtacagc
atgctgaccagctggaccttcggcgaactgccggagctgctggaaatccagcaaggcaag
cagaccctgatcggcttcccggcgctggtggacaaggcaacccattgcgacctcgaagtc
ttcgacgatccgaacgaagcggcgcgcatccaccgcctcggcttgcgccgtctgtttgcc
ttgcagctgaaagagcagctgaaattcctggaaaagaatattccgggcctgcagcagatg
ggcatgcagttcattgccctcggttcgcaggaagagttgcgcgaccagatcatttccgcc
ggcctggaacgcgcctgcctgcagacgcctttgccacggaatgcggagcagttcgcgcaa
cgcaaggatgaaggcaagtcgcgcctaggtttgctgagcaatgaaattgcccggctggcc
ggcctgatcctggccgaataccacggcttgccgaagaagctgcaaggggccaaaggccat
gcgcaggcggtggccgatatccagtcgcaattgcaggcgctggtcggcaagcgtttcatc
gccgacaacgactatggcaacctgacgcatttcccgcgctacctgaaggcgatcaacgtc
aggttggagaaattgcgcgcagatccgacccgcgatggacgtttgttggcggaatggcta
caagtagccacgccatggcagcgcgcgcaaaaagaccgcggcagcaagaattccgatccg
aagatgaatgaattccgctggctgctggaagagttgcgggtctcgctgtttgcgcaggag
ttgaagacgccgatgcctgtctcggccaagcgcttgcaaaaagtgtgggaaaccatgcag
cgctag
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