Corynebacterium provencense: Csp1_05660
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Entry
Csp1_05660 CDS
T06939
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cpre
Corynebacterium provencense
Pathway
cpre03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cpre00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Csp1_05660 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpre03021
]
Csp1_05660 (rpoB)
03400 DNA repair and recombination proteins [BR:
cpre03400
]
Csp1_05660 (rpoB)
Enzymes [BR:
cpre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Csp1_05660 (rpoB)
Transcription machinery [BR:
cpre03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Csp1_05660 (rpoB)
DNA repair and recombination proteins [BR:
cpre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Csp1_05660 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AWT25380
UniProt:
A0A2Z3YQT4
LinkDB
All DBs
Position
650273..653764
Genome browser
AA seq
1163 aa
AA seq
DB search
MAVSRQTSSTAGIPGASHRYSFAKIDAPIEVPGLLDVQRESFAWLVGTPEWRARRQAEAE
EGTRVTSGLEDILDELSPIEDYSENMSLTLSEPRFDDVKNTIDECKDKDINYSAPLYVTA
EFTNALSGEIKSQTVFIGDFPMMTDKGTFIINGTERVVVSQLVRSPGVYFDESIDPSTER
PLHAVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGLTTEEITERFGFSEI
MMSTLEKDGVANTDEALLEIYRKQRPGESPTRDSAQALLENSFFKAKRYDLAKVGRYKVN
RKLGFDGDTGAMTLTEQDILTTIEYLVRLHAGEKSMTSPDGVEIPLGVDDIDHFGNRRLR
TVGELIQNQIRVGLSRMERVVRERMTTQDAESITPTSLINVRPVSAAIREFFGTSQLSQF
MDQNNSLSGLTHKRRLSALGPGGLSRERAGLEVRDVHASHYGRMCPIETPEGPNIGLIGN
LATYARVNPFGFIETPYRRVVDGVITDQVDYLTADEEDRHIIAQAKTAVDSEGRFVDDEI
EVRLRGGDVEVVPAGEVDYMDVSPRQMVSVGTAMIPFLEHDDANRALMGANMQKQAVPLL
RSEAPYVGTGMELRSAYDAGDVVITPKAGVVEYVSADYITVMDDDGVRDTYMLRKFERTN
QGTCYNQKPLVDQGQRVEAGQAIADGPGTHNGEMSLGRNLLVAFMPWEGHNYEDAIILNQ
RMVEEDLLTSIHIEEHEIDARDTKLGPEEITRDIPNVGDDVLADLDDRGIVRIGADVRDG
DILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSMKVPHGETGKVIGVRVFSREDDD
DLAPGVNQMVRVYVAQKRKIQDGDKMAGRHGNKGVVGKILPAEDMPFLPDGTPIDIILNT
HGVPRRMNIGQVLETHLGWLAKNGWKVDTQSEDPKVRAMLETLPEELYDVPPESLVATPV
FDGAENEELSGLLRSVRPNSDGMALTDEFGKAVLIDGRSGEPYPYPISVGYMYMLKLHHL
VDEKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWAMQAYGAAYTLQELLTIKSDDV
VGRVKVYEAIVKGENIPDPGIPESFKVLLKELQSLCLNVEVLAADGTPMELSSTDDDELD
HANAALGINLSRDERPDAESDAI
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
ttggcagtctcccgccagaccagttccacggccggaatccccggggcttcacatcgttac
tccttcgcgaagatcgatgccccgatcgaggtacccggtcttctcgacgttcagagagag
tccttcgcctggctcgtcggcacgcccgagtggcgtgcccgccggcaggcagaggcagag
gaggggacccgcgtcacgagcggtctcgaggacatcctcgacgaactgtccccgatcgag
gactactccgagaacatgtccctgaccctgtccgagccccgcttcgacgacgtgaagaac
acgatcgacgagtgcaaggacaaggacatcaactactccgcgccgctgtacgtgaccgcg
gagttcaccaatgcgttgtccggtgagatcaagagccagaccgtcttcatcggtgatttc
ccgatgatgaccgacaagggcacgttcatcatcaacggcacggaacgtgtcgtcgtctcg
cagctcgtccgttccccgggcgtctacttcgacgagtccatcgacccgtccacggagcgt
cccctgcacgcggtgaaggtcatcccgtcccgtggtgcatggctcgagttcgacgtcgac
aagcgtgacaccgtcggcgtccgtatcgaccgcaagcgtcgtcagcccgtcaccgtcctg
ctcaaggcactcggcctgaccaccgaagagatcaccgagcgtttcggtttctccgagatc
atgatgtccaccctcgagaaggacggcgtcgccaacaccgacgaagccctgctggagatc
taccgtaagcagcgcccgggtgagtcacccacacgtgactccgcccaggccctgctcgag
aacagcttcttcaaggccaagcgctacgacctggccaaggtgggccggtacaaggtgaac
cggaagctcggcttcgacggcgacaccggtgccatgaccctcaccgagcaggacatcctc
accaccatcgagtacctggtgcgcctgcacgccggcgagaagtccatgacctcgcccgac
ggggtggagatcccgctcggtgtcgacgacatcgaccacttcggcaaccggcgtctgcgt
accgtcggtgagctgatccagaaccagatccgggtgggactgtcccgcatggagcgcgtc
gtccgcgagcggatgacgacccaggacgccgagtcgatcaccccgacttccctgatcaac
gtccgcccggtctccgccgcgatccgtgagttcttcggcacctcgcagctgtcgcagttc
atggaccagaacaactcactgtccggcctgacgcacaagcggcgtctgtcggcgctgggt
cccggcggcctgtcccgtgaacgcgcgggcctcgaggtccgtgacgtccacgcgtcccac
tacggccgtatgtgcccgatcgagacccctgaggggccgaacatcggcctgatcggcaac
ctcgccacctacgcgcgggtcaaccccttcggattcatcgagaccccgtaccgcagggtc
gtcgacggtgtgatcaccgaccaggtggactacctcaccgctgacgaggaggaccgtcac
atcatcgcgcaggcgaagaccgcggtggactccgagggccgtttcgtcgacgacgagatc
gaggtccgtctgcgcggcggtgacgtcgaggtcgttcccgccggcgaggtggactacatg
gacgtctccccgcggcagatggtctccgtgggtaccgccatgattcccttcctggagcac
gacgacgccaaccgtgccctcatgggtgcgaacatgcagaagcaggccgtgccgctgctc
cgctccgaggccccgtacgtcggaaccggtatggagctccgctccgcctacgacgccggt
gatgtcgtcatcaccccgaaggccggtgtcgtcgagtacgtctccgccgactacatcacc
gtgatggacgatgacggcgtgcgtgacacctacatgctgcgcaagttcgagcgcaccaac
cagggcacctgctacaaccagaagcccctggtcgaccagggtcagcgagtcgaggcaggt
caggccatcgccgacggtcccggcacccacaacggggagatgtccctcggacgcaacctc
ctcgtcgccttcatgccgtgggagggtcacaactacgaggacgccatcatcctcaaccag
cggatggtggaggaggacctcctcacctccatccacatcgaggagcatgagatcgatgcc
cgggacaccaagctcggtcccgaggagatcacccgtgacatccccaatgtcggtgacgac
gtgctcgcggacctcgacgaccggggtatcgtccgcatcggcgccgacgtccgcgacggc
gacatcctggtcggcaaggtcaccccgaagggtgagaccgagctgaccccggaggagcgg
ctgctgcgcgcgatcttcggtgagaaggcccgcgaggtccgtgacacctccatgaaggtt
ccccacggtgagaccggcaaggtcatcggcgtccgcgtgttctcccgcgaggacgacgac
gacctcgcccccggcgtcaaccagatggtccgcgtctacgtcgcccagaagcgcaagatc
caggacggcgacaagatggcgggacgccacggcaacaaaggcgtcgtcggcaagatcctg
ccggcagaggacatgcccttcctgccggacggtaccccgatcgacatcattctcaacacc
cacggtgtgccgcgtcgtatgaacatcggtcaggtcctggagacccacctcggttggctg
gcgaagaacggctggaaggtcgacacccagtccgaggacccgaaggtccgtgcgatgctg
gagacccttccggaggagctttacgatgttccgccggagtccctcgtggcgacacccgtg
ttcgacggtgccgagaacgaggagctgtccggtctgctgcgctcggtccgtcccaactcc
gacggcatggcactgaccgacgagttcggcaaggccgtgctcatcgacggccgttccggc
gagccgtacccgtacccgatctcggtcggttacatgtacatgctgaagctgcaccacctc
gtcgacgagaagatccacgcccgttcgaccggtccgtactccatgatcacccagcagccg
ctcggtggtaaggcacagttcggtggccagaggttcggtgagatggaggtgtgggccatg
caggcgtacggtgcggcctacaccctccaggagcttctcaccatcaagtccgatgacgtc
gtcggccgcgtgaaggtgtacgaggcgatcgtgaagggcgagaatatcccggatccgggt
atcccggagtctttcaaggtcctcctcaaggagctgcagtccctgtgcctcaacgtcgag
gttctcgcggctgacggaactccgatggagctgagctcgaccgacgacgacgaactcgac
cacgcgaatgctgctctcgggatcaacctgtcccgggacgagcgtcctgacgccgagagc
gacgcgatctag
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