Crassaminicella profunda: K7H06_10580
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Entry
K7H06_10580 CDS
T07525
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
cprf
Crassaminicella profunda
Pathway
cprf02020
Two-component system
cprf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cprf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
K7H06_10580 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K7H06_10580 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cprf03021
]
K7H06_10580 (rpoN)
Transcription machinery [BR:
cprf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K7H06_10580 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
HTH_23
Sigma70_r4
LacI
HTH_Tnp_ISL3
HTH_Crp_2
HTH_3
Sigma70_r4_2
HTH_29
HTH_21
MarR
HTH_IclR
Arg_repressor
HTH_24
DNTTIP1_dimer
MarR_2
HTH_AraC
HTH_31
PCI
HTH_5
HTH_20
Fpg-like_C
HepT-like
HTH_12
Motif
Other DBs
NCBI-ProteinID:
QZY57328
LinkDB
All DBs
Position
complement(2229101..2230489)
Genome browser
AA seq
462 aa
AA seq
DB search
MRLGFNLNIEQVQKLVMTPELKQAIQILQYNHQELNQFIDEQVLINPLLDLGASREGELR
KKQEEKTEKQEVDWKEYFKEYDDISYKQPNYHKDKEEVSFEQFVSADITLTEHLLFQLQF
AILKEQFTSIGKYIIESLDVKGYLNINISEIASYFHVNEETVEKILSVIQTFDPPGIAAR
SLEECLLIQVKQKGIEDSKILKVISEHLDDVAENRLMNISKNLNISTKKVQQITDFIKTL
EPKPGRAFSSGEEIKYITPDVTVEKIDGEYVILVNDSTAPRLSISSYYRKMLVHENKDSN
TSKFLTGKLNSAMWLIKSIEQRRQTIYNVVKAILDYQMDFFEKGRKCLKPLTLKQIADEV
GIHESTVSRAVNGKYMQSPRGVFEMKFFFTSGVSNRMGEGIASESIKSMIKDMIDHENIR
KPLSDQAISDKLKEKGIEISRRTVAKYRDEMKILSSSKRKRF
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgagattagggtttaatttgaatatagaacaagtgcaaaaattagtaatgacccctgag
ttaaaacaagctattcagatactacaatacaatcatcaagaattaaatcaatttattgac
gagcaagtactaatcaaccctcttctcgatttaggcgcctctcgagaaggcgaactaaga
aaaaaacaagaagaaaaaacggaaaagcaggaagtggattggaaagagtattttaaagaa
tatgatgatataagctataaacagcccaattaccataaagataaagaagaagtatccttt
gaacaatttgtgtctgcagatattacattaacagagcatttattatttcaattacaattt
gctattttaaaagaacaatttacaagcataggaaagtatattatagaaagtctagatgta
aagggatatttaaatataaacatttctgaaatagcttcttattttcatgtaaatgaagaa
acagtagaaaaaatattatcagttattcaaacctttgatccacctggtattgctgctaga
agcctagaagaatgtttattgattcaggttaagcaaaaaggaattgaggattctaaaatt
ttaaaagtcatatcagagcatttagatgatgtggcagagaatagattgatgaatatttct
aaaaatttaaatatatctacaaagaaagttcaacagattacagattttattaaaacccta
gaacctaagccaggcagagctttcagttcaggagaagaaatcaagtatattacgcctgat
gtgactgtagaaaagattgatggggaatacgttatcctggtgaatgatagtacggcgcca
agattgtctattagttcatattatagaaaaatgttagtacatgaaaataaagattcaaat
acatcaaaatttctcacgggaaaattaaattcagccatgtggttgattaaaagtatagag
caaagaagacaaaccatttataatgttgtgaaagctattttagattaccagatggacttt
tttgaaaaaggaagaaaatgcttaaaacctttaactttaaagcagattgctgatgaagtg
ggaatccatgaatcaacagtaagtagagcagttaatggtaaatatatgcaaagcccacga
ggggtttttgaaatgaaattcttttttacgagtggtgtatcgaatagaatgggagaagga
attgcttcagaaagtattaagagcatgattaaggatatgattgatcatgaaaatattaga
aaacctcttagtgaccaagctatatcagataaattaaaggaaaaagggattgagatttca
agaagaacggttgcaaaatatcgagatgagatgaagatattatcttcttcaaaacgaaaa
agattttaa
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