Candidatus Cytomitobacter primus: FZC34_01080
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Entry
FZC34_01080 CDS
T10141
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cpri Candidatus Cytomitobacter primus
Pathway
cpri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FZC34_01080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpri03021
]
FZC34_01080
03019 Messenger RNA biogenesis [BR:
cpri03019
]
FZC34_01080
Transcription machinery [BR:
cpri03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FZC34_01080
Messenger RNA biogenesis [BR:
cpri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FZC34_01080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
NACHT
ATPase_2
AAA
Spore_III_AA
S1CSD-TOTE-2
AAA_18
AAA_22
AAA_35
Rho_N
Motif
Other DBs
NCBI-ProteinID:
QEK38822
UniProt:
A0A5C0UHK0
LinkDB
All DBs
Position
246673..247917
Genome browser
AA seq
414 aa
AA seq
DB search
MNLCELRGKKNTELVKIATSLDLNLDDIKNKDLLLEIIREYSNRGYDIKAEGTLEVINEG
YGFVRFAAEDYTISDDDVHVHQQFIGKLNLKPGDVVEILLKIPENNKNYSVKKVISINSK
PAKRILGRTSFDSLTALYPDRKMKLEINRENLSLRTLDCIAPIGFGQRALIVAPPRTGKT
SLLQNIANAIHHNYKDSVELMVLLVGERPEEVTDMKRSVHGEVISSTFDEPASRHVKVAD
IVIEKAKRMVEDGKDVVILMDSITRLARAYNSVIPSSGKVLTGGVDAHALQYPKKFFGSA
RNVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNADIILDRRSADKRIFPALDIIKSG
TRKEELLRDADELSKIWLIRRIISDMNTVEALEFLLDKLHSTKDNEHFFRIMNS
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
ataaatttgtgtgaattaagaggcaagaaaaatacagagttagttaagattgcaacatca
cttgatttgaatttagatgatattaagaataaagatctattattagaaattattagagaa
tattctaatcgtggatatgatattaaagcagaaggaaccttagaagttattaatgaagga
tacggttttgtaagatttgcagccgaagattatacaatttcagatgatgatgtgcatgta
catcagcagtttataggaaaattgaatttaaagcctggagatgtagtagaaattttactt
aaaattccagaaaacaataaaaattattctgttaaaaaagtcatttctattaatagtaaa
ccagctaaaagaatacttggaagaacatcatttgattctttgacagcattatatccagac
agaaaaatgaagttagaaattaatagagaaaatctaagcttaagaactttagattgtatt
gctcctataggatttggtcaaagagctttgattgttgctccacctagaactggtaaaact
agtttgctgcaaaatattgctaatgcgattcatcataactataaagattctgtagaattg
atggttttattagttggagaaagacctgaagaagttacagatatgaaaaggtctgtgcac
ggtgaagtgattagttcaacatttgatgagcctgcttctcgtcatgtgaaagttgcagat
attgtaatagaaaaagcaaaacgtatggttgaagatggcaaagacgttgtgattttaatg
gattccattactcgtttagcaagggcttataatagtgtgattccatcatctggtaaagtt
ttaactggtggtgttgatgctcatgcgctgcaatatcctaagaaattctttggatcagct
agaaatgtagaagaaggcggttcacttacaattatcgcaactgctttggttgatactgga
tcacgaatggacgaagtgatttttgaagaattcaaaggtactggtaatgctgatataatt
cttgatagaagatcagctgataaaaggattttccctgcattagatattattaaatctggt
acaagaaaagaagagttacttagagatgcagatgagttatcaaaaatttggcttattcgc
agaataatatctgatatgaatacagttgaagctttagaattcctattagataaactgcat
agtacaaaagataatgagcatttttttagaataatgaatagttaa
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