Cellulosimicrobium protaetiae: FIC82_009275
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Entry
FIC82_009275 CDS
T08736
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cprt
Cellulosimicrobium protaetiae
Pathway
cprt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cprt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIC82_009275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cprt03019
]
FIC82_009275
03009 Ribosome biogenesis [BR:
cprt03009
]
FIC82_009275
Enzymes [BR:
cprt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FIC82_009275
Messenger RNA biogenesis [BR:
cprt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FIC82_009275
Ribosome biogenesis [BR:
cprt03009
]
Prokaryotic type
rRNA processing factors
FIC82_009275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QJW38363
UniProt:
A0A6M5ULX1
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All DBs
Position
2217161..2220640
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AA seq
1159 aa
AA seq
DB search
MTTTGRKPARRRATRSAAPPQTPPVPVEATASVDASPVDAPAPVDAGPSGAPASDVAEKK
PARRSRRATRTTSAPVEPPAGATEDPAATAAAAPSSVGPADGDAPSADAEAAVSAAPKGR
GRTTRRTQSGGKKAATASADAPLDVLSEFGLNAPPAAEQVAPVPAAGPDADALLGAADAP
RKAKRTRTTRKTAPAVEAPEVPAEPVADAVVEVATEVPATVTEAPAEKKPARRSRRATSA
AGAPAAKVPATAEDAAPASTAEAPASEPVEATKKPARRSRRATSKAAPAEAAPETQQPAE
PTSDAAPSPATAPETPVSPAATGAGTSTPRLATTALLFQAPDPAAAPRRPRRAQSPAGPP
RHVEPAAVAAEPTPVVAEPRERAAKEAPSAPAVPQRTEDVTAEVALTGEDAAAVEEIEAI
ESELVAEGIELPDDAFGPEDFVEPDEDAAAEEQPTSEDAESGPRRRRRRGGRGRRGRPDA
GRDQDESDEAPTEGDEPADTDATTEGDETEPEAADAEGGEDEAGSSRRRRRRRRGGRAEG
GEASSTRSRTRERSLADEVTALKGSTRLEAKRQRRREGRDAGRRRQIITEAEFLARREAV
ERSMVVRERAGRTQIAVLEDGVLVEHYVSQQSQASMAGNVYLGRVQNVLPSMEAAFIDVG
KGRNAVLYAGEVNWDAAGLEGQPRRIEQALKSGDSVLVQVTKDPIGHKGARLTSQITLAG
RYLVFVPGGGMTGISRKLPDTERNRLKKILKEVVPDGAGVIVRTAAEGASEEELRADVER
LRGQWEAIEKKSKSASAPALLQGEPDLAIRVVRDIFNDDFSSLVVEGDGAWSEISTYVEE
LAPDLRERVSKWTGTQDVFTVHRVDEQLAKGMDRKVWLPSGGSLVIDRTEAMTVVDVNTG
KFTGSGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVEC
LGRDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSETCEHCHGRGFIVHTDPIEKSGGNG
RGGHDHGGGGGGSSAATEEPAESGRSGRSRRKRGSGASAAASKDAAITLPQPAVPVLPEV
SSEARAAVKATLATIAAAAAHAHEHEHEHDGAAPEPAADGVTPTEDVPAPVVETGADVAA
EAGAEAEPGASGDAEPVEE
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
ctgaccaccaccgggcgcaagcccgcacggcgccgcgcgacccgcagcgcggccccgccc
cagacgcccccggtacccgtcgaggcgaccgcctccgtcgatgcgtcgcccgtcgacgcg
cccgcgccggtcgacgcgggtccctccggcgccccggcctccgacgtggccgagaagaag
cccgcgcgccgctcgcgccgcgcgacccggacgacgtccgcgccggtcgagccccccgcg
ggcgcgaccgaggatcccgccgcgaccgccgccgcggcaccgtcctccgtcggcccggcc
gacggcgacgccccctcggccgacgccgaggcggcggtgtccgctgcgccgaagggccgc
ggacgcaccacgcgtcgcactcagagcggcggcaagaaggctgcgaccgcgtcggccgac
gctccgctcgacgtgctctccgagttcggcctgaacgcgcctccggccgcggagcaggtc
gcccccgtccccgccgccgggccggacgccgacgccctgctcggcgccgccgacgcaccg
cgcaaggccaagcgcacccggacgacgcgcaagactgcccccgcggtcgaggcgccggag
gttcccgccgagcccgtggcggacgccgtcgtcgaggtggcgaccgaggtgcctgcgacg
gtgaccgaggctcccgcggagaagaagcccgcgcgccgttcgcgtcgcgcgacgtccgcg
gccggagcgcctgccgcgaaggtcccggcgacggccgaggacgcggcgcccgcgtcgacc
gccgaggcgcccgcgtcggaaccggtggaggcgacgaagaagcccgcgcgccgctcgcgc
cgcgcgacctcgaaggcggcacccgccgaggccgctcccgagacgcagcagccggccgag
ccgacgtcggacgccgcgccgtcgcccgcgaccgcgccggagacgcccgtctcgcccgcc
gcgaccggtgcgggcacgagcacgccgcgcctcgcgacgaccgcgctgctgttccaggcg
cccgacccggcggccgcgccgcgccgtccgcgccgcgcccagagcccggccgggccgccc
cgccacgtcgagcccgccgccgtcgcggccgagccgacgcccgtcgtggccgagccgcgc
gagcgtgcggcgaaggaggcgccgagcgccccggccgtgcctcagcgcacggaggacgtg
accgccgaggtcgcgctcacgggcgaggacgccgccgccgtcgaggagatcgaggccatc
gagtcggagctcgtcgccgaggggatcgagctccccgacgacgcgttcggcccggaggac
ttcgtcgaacccgacgaggacgccgccgccgaggagcagcccacgtccgaggacgccgag
tcgggtccgcgccgtcgtcgtcgccgcggcggtcgcggccgtcgcggtcgcccggacgcg
ggtcgggatcaggacgagagcgacgaggcccccaccgagggcgacgagccggccgacacc
gacgcgaccaccgagggcgacgagaccgagcccgaggccgcggacgccgagggcggcgag
gacgaggcgggcagcagccgccgtcgccgtcgccgccgccgcggcgggcgggccgagggc
ggcgaggcctcgtcgacccgttcgcgcacgcgcgagcggagcctggccgacgaggtcacg
gcgctcaagggctcgacgcgcctcgaggcgaagcgccagcgccgccgcgagggacgcgac
gccggtcgccgccgccagatcatcaccgaggcggagttcctcgcgcgccgcgaggcggtc
gagcgctcgatggtcgtgcgcgagcgcgcgggccgcacgcagatcgccgtgctcgaggac
ggcgtgctcgtcgagcactacgtctcccagcagtcgcaggcgtccatggcgggcaacgtc
tacctgggccgggtccagaacgtcctgcccagcatggaggccgcgttcatcgacgtcggc
aagggccgcaacgccgtgctctacgcgggcgaggtcaactgggacgcggccgggctcgaa
gggcagccgcgtcggatcgagcaggcgctcaagtcgggcgactcggtgctcgtgcaggtg
accaaggacccgatcgggcacaagggcgcgcgcctcacgtcgcagatcacgctcgcgggc
cgctacctcgtgttcgtccccggcggcggcatgacgggcatcagccgcaagctcccggac
accgagcgcaaccgcctcaagaagatcctcaaggaggtcgtgcccgacggcgcgggcgtc
atcgtgcgcaccgcggccgagggcgcgagcgaggaggagctgcgggccgacgtcgagcgt
ctgcgcggccagtgggaggccatcgagaagaagtcgaagagcgcgtcggcccccgccctg
ctccagggcgagcccgacctcgcgatccgcgtggtccgcgacatcttcaacgacgacttc
agctcgctcgtcgtcgagggcgacggggcgtggtcggagatctcgacctacgtcgaggag
cttgcgccggacctgcgcgagcgcgtctcgaagtggaccggcacgcaggacgtcttcacg
gtgcaccgggtggacgagcagctcgcgaagggcatggaccgcaaggtctggctgccctcg
ggcgggtcgctcgtcatcgaccgtaccgaggcgatgaccgtcgtcgacgtcaacacgggc
aagttcaccggctcgggcggcacgctcgaggagaccgtgacgcgcaacaacctggaggcg
gccgaggagatcgtccgccagctccggctgcgcgacatcggcggcatcatcgtcatcgac
ttcatcgacatggtgctcgagtcgaaccgcgacctcgtgctgcgccgtctcgtcgagtgc
ctgggccgcgaccggaccaagcaccaggtcgccgaggtcacgtcgctcgggctcgtgcag
atgacgcgcaagcgcgtcggccagggcctcgtcgaggcgttcagcgagacgtgcgagcac
tgccacgggcgcgggttcatcgtgcacaccgacccgatcgagaagtcgggcgggaacggc
cgtggtggccacgaccacggtggcggcggcggtgggagcagcgctgccaccgaggagccg
gccgagtcgggtcgttcgggccggtcgcgtcgcaagcgcggctccggggcgagcgccgcg
gcgtcgaaggacgccgcgatcaccctgccgcagccggccgtcccggtcctgccggaggtc
tcctccgaggcgcgcgcggccgtgaaggccacgctcgcgacgatcgctgcggccgcggcg
cacgcccacgagcacgagcacgagcacgacggtgcggctccggagccggccgccgacggc
gtgacgcccacggaggacgtgcctgcgccggtcgtggagaccggagccgacgtcgccgcg
gaggcgggagcggaggccgagccgggcgcgagcggcgacgcggagcccgtcgaggagtga
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