Cyclonatronum proteinivorum: CYPRO_1934
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Entry
CYPRO_1934 CDS
T05709
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cprv
Cyclonatronum proteinivorum
Pathway
cprv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cprv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CYPRO_1934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cprv03400
]
CYPRO_1934
Enzymes [BR:
cprv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CYPRO_1934
DNA repair and recombination proteins [BR:
cprv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CYPRO_1934
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AXJ01184
UniProt:
A0A345UL32
LinkDB
All DBs
Position
complement(2470492..2473902)
Genome browser
AA seq
1136 aa
AA seq
DB search
MAISHIRRQLRQLLPVNDILKAYAQKQAVHLEGYAGSLSSFLGAELAESVKHAVFIFPDE
ERAQYFAGDLAVLGVRNLHFFPDSHNKPYQDVSIQDSATLVQRAEVLDAVIQNDENILVA
SAAALCEKVISPQAFSGAAISLSKGTEIDMESLREQLIDSGFTEVNFVEKPGEMAVRGGI
FDIFPYTGDYPVRLEFFGDEIDSIRQFDADSQRSVGFLNSSRIVPNTSAFRSTQRETLLN
YFPEDTLYVLFNAPLCEAGAGDQLQKATEIYEAVLTQLDKQRKKGEEDLTAPPAPGELFL
SAEELLKRLSGYGRVFFGDVFPDEKNIKAGFRHALGGKMQPVFNGSVKLLEQSLRELSAA
GTRTFILCGNKGQQERLAELLGEPDESLNYELSLETLHEGFILQDHGLALYTDHQIFNRY
HRPATKRRQPGGGISFKELKDLNIGDYVVHVDYGIGRFAGFQKIKVKDTVQEVVVLKYQE
DSVLYVNVSSLYKIQKYSGKDGHQPRITKLGSGEWARKKASAKRKVKDIARELIQLYAKR
KAQKAHAFPPDSYMQTEMEAAFIFEETPDQLKAIEDVKADMQREMPMDRLICGDVGFGKT
EVAVRAAFKAALDGKQVALLVPTTILADQHFKTFKSRLEPFPVNVGLLSRFRTKAEQKDT
IEKLKTGEIDILIGTHRITSKDVEFKNLGLLIIDEEQRFGVATKEKIKRFRASVDTLTLT
ATPIPRTLQYSLMGARDLSVITTPPPNRQPVQTELIGFEGERLRDAIVQEVSRGGQVFFI
HNRVHNIEEMTGLVKDLVPNVKVRFAHGQMKGSELERIILDFYAHKFDVLVSTNIVESGI
DIANANTIIINHADKFGLSELHQLRGRVGRSNRKAFCYLISPPFQALPEDSRKRLLALVE
YSDLGSGFNIAMRDLDIRGAGDILGGEQSGFISDVGFDLYTKILNEAVRELKESEFSELF
GETDPDIEYPETTVEFDEAALLPQWYVRDNVERLNLYRRLASVNQPEEIDSWSDEVQDRF
GKIPEETSCLIQAARIKLLAAQLLFIKVTVRAGRVWLLCPSAESRAGQHFYAGGRLQNMI
GWLQENDRKVSLAQKDQAIRIVVQEVPDMAACISLLKALNTEFAAGQRTAETVPGM
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atggccatcagccatattcgcagacagctccggcagctgttgccggtcaatgacattctg
aaagcttacgcccaaaaacaggcggttcatcttgaggggtatgccggctcgctgtcctcg
tttttgggggcggagcttgccgagagcgtaaagcacgcggttttcatcttcccggatgag
gagcgtgcgcagtacttcgccggcgatcttgccgtgctcggggtgcgcaacctgcacttt
ttccccgattcgcacaacaagccctatcaggatgtcagcattcaggattcggctacgctc
gtgcagcgggcggaggtgctcgatgccgtcatccaaaacgacgagaacatccttgtcgct
tcggcggcggcgctgtgtgagaaggttatttcgccccaggccttttccggggcggccata
tccctgagcaagggtactgaaatcgacatggaaagcctgcgcgaacagctcattgacagc
gggtttaccgaggtcaatttcgtggagaaacccggcgagatggcggtgcgcggcggcatt
ttcgacatcttcccctacaccggcgattaccccgttcgcctcgagtttttcggggatgaa
atcgattccatccggcaattcgacgcggattcgcagcgctcggtcggcttcctcaacagt
tcgcgcattgtgccgaacacctcggctttccgcagcacgcagcgggaaacgctgctgaac
tatttccccgaggacaccctctacgtactcttcaatgccccgctctgcgaagccggtgcc
ggggatcagcttcagaaagcgaccgaaatttatgaagccgtcctcacacagcttgataaa
cagcgcaaaaaaggcgaagaagatctcacagccccgcctgcgcccggcgagctgttcctg
agcgcggaagaactgctcaagcggctcagcggctacggtcgggtgttttttggggatgta
tttccggatgaaaaaaacatcaaagccggatttcgtcacgcgctcggcggcaaaatgcag
ccggtgtttaacggctcggtgaagctgctcgaacaaagcctgcgggagctgagcgcggcg
ggcacgcggaccttcatcctgtgcgggaacaaaggtcagcaggagcgacttgcggagctg
ctgggcgagccggacgaaagcctgaactacgaactcagcctcgaaaccctgcatgaaggc
ttcatcctgcaggatcacggccttgcgctctacaccgatcatcagatcttcaaccgctat
caccggcctgcgaccaagcggcgtcagccgggcggggggatttccttcaaggaactgaag
gacctcaacatcggcgattatgtcgtgcatgtggattacggcatcgggcgctttgcgggc
tttcagaaaatcaaggtgaaggacaccgtgcaggaagtcgtcgtcctgaagtatcaggaa
gacagcgtgctgtacgtcaatgtttcgagcctgtacaaaatccagaaatattcgggcaag
gacgggcatcagccgcgaattaccaagctcggcagcggcgaatgggcgcgcaaaaaggcg
agtgcaaagcgcaaagtcaaggacatcgcccgtgagctcattcagctttacgccaagcga
aaggcgcagaaagcgcatgccttcccgccggacagctacatgcagaccgagatggaagcc
gccttcatttttgaggaaacccccgatcagctcaaggccatcgaggatgtgaaagccgac
atgcagcgcgaaatgcccatggaccgccttatatgcggggatgtgggattcggcaaaacc
gaggtcgctgtgcgtgccgcgttcaaagccgcgctggacggcaaacaagtcgccctgctt
gtgccgacgaccatcctcgccgatcagcacttcaaaacattcaaaagccggcttgaaccc
ttcccggtaaatgtcggcctgctttcccgctttcgcaccaaagccgagcaaaaagatacc
atcgaaaaactgaaaaccggcgagatagacatcctcatcggcacacaccgcatcacttcg
aaggatgtggaattcaaaaatctcggcctgctcattattgatgaagaacagcggttcggg
gttgcgaccaaggagaaaatcaagcggttccgcgcttcggtcgataccctcacgcttacc
gcaacgcccatcccgcgcaccctgcagtactcgctcatgggcgcgcgcgacctcagcgtg
atcacaacgcccccaccgaaccgtcagccggtacagaccgagctcatcggctttgaaggc
gaacggctgcgggacgccatcgtgcaggaagtcagccggggcggacaggtgttcttcatc
cacaaccgcgtgcacaacatcgaagaaatgaccggcctggtgaaagacctcgtgcctaat
gtaaaggtacggtttgcgcacgggcagatgaagggcagcgagcttgagcgcatcatcctc
gatttttatgcgcacaaattcgacgtgctcgtttcgaccaacatcgtggagagcggcatc
gacatcgcgaacgccaacaccatcatcatcaatcatgccgataaatttggcctcagcgag
ctgcatcagcttcgggggcgcgtcgggcgctccaaccggaaagccttctgctatctcatt
tcgcccccgtttcaggcgctgcccgaagacagccggaagcggcttttggcgctggtcgaa
tactccgatctcgggtccggcttcaacatcgccatgcgcgacctcgatatccgcggggca
ggcgatattctcgggggcgaacaaagcggcttcatctcggatgtcggcttcgacctctac
accaaaatcctgaacgaggccgtgcgcgagctcaaagaaagcgagttttccgaactcttt
ggcgaaaccgatccggatattgagtatcccgaaacgacggtcgaattcgatgaagccgcg
ctgctgccgcagtggtacgtgcgcgacaacgtggagcgcctcaacctgtaccgcaggctt
gcaagcgtcaatcagccggaagaaatcgacagctggtccgatgaggtgcaggaccgcttc
gggaagatccccgaagaaacaagctgcctgattcaggctgcgcgcatcaaactgctggcc
gcgcaactgctgtttatcaaggtcaccgtccgggcgggccgcgtttggctgctgtgcccc
tccgccgaaagccgtgcgggacagcacttctacgccggtggccgcctgcaaaacatgatc
ggctggctgcaggaaaacgaccggaaggtcagtctcgcccaaaaagatcaggccatccgc
atcgtagtgcaggaagtgcccgatatggccgcctgcatcagcctcctgaaggcgctcaac
accgaattcgctgcgggtcagcgaaccgcggaaaccgtacccggcatgtag
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