Cyclonatronum proteinivorum: CYPRO_3003
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Entry
CYPRO_3003 CDS
T05709
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cprv
Cyclonatronum proteinivorum
Brite
KEGG Orthology (KO) [BR:
cprv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cprv03016
]
CYPRO_3003
Enzymes [BR:
cprv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CYPRO_3003
Transfer RNA biogenesis [BR:
cprv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CYPRO_3003
Prokaryotic type
tRNA splicing ligases
CYPRO_3003
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AXJ02240
UniProt:
A0A345UP38
LinkDB
All DBs
Position
3878499..3879671
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AA seq
390 aa
AA seq
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MKKTITTEKIPLYLWLDDLEDGALLQALDLANLPVAFHHIAIMPDSHIGFGMPIGGILAT
RDAVVPNAVGVDIGCGMCSLRTSLTGLHPAQLREIMGLIRRLVPVGFQHHKEDQPESVMP
ALPDESSRLTPVSEREFAKARRQVGTLGGGNHFIELQQGSDGYVWIMIHSGSRNIGLQVA
EHYHKLAMARTEARKEKGAVPKDLSFFRADDPLYHAYLAEMRFCIAFALANRKLMMQRVQ
EAVAAVAGDISFSGFINKPHNFADTETHYGEEVLVHRKGATRAREGEPGMIPGSQGSPSY
IVRGKGNPLSFASCSHGAGRVMSRNAARRKLDLKAEQQKLEKMGVLHAVRGKRDLDEAPS
SYKNIRKVMANQQDLVEIVTELKPLAVIKG
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacgataacaactgaaaaaatccccctttacctgtggcttgatgatcttgag
gatggtgccctgttacaggcgcttgacctggcgaacctgccggtcgcctttcaccatatc
gcgatcatgccggattcgcacatcgggttcgggatgccgatcggcggcattctcgccacg
agggacgcggtcgtgccgaatgcggtcggggtcgatatcggctgcgggatgtgctcgctg
cgtacgagcctcaccgggctgcaccctgcgcagttgcgtgaaatcatgggcctgatcagg
cggctcgtaccggtcgggtttcagcaccacaaggaggatcagccggaaagcgtgatgccc
gcgctgcccgacgaaagcagcaggcttacaccggtttctgagcgcgaattcgcgaaagcg
cgtcgtcaggttggcacgctcgggggcgggaatcacttcattgagctgcagcagggcagc
gacggttatgtgtggatcatgattcactccggctcgcgcaatatcggacttcaggtggca
gagcattatcacaagctcgcgatggcacgaaccgaagcgcgcaaagaaaaaggtgccgta
cccaaggatctatcgtttttccgcgcagacgacccgctttatcacgcctacctcgcggag
atgcgcttttgcatcgcttttgccctcgccaaccgcaagctgatgatgcagcgcgtacag
gaggccgttgcagcagtagcgggcgatataagcttttcgggcttcatcaacaaaccgcac
aacttcgcagatacggaaacacactacggcgaggaggtgcttgtgcaccgcaaaggcgca
acccgcgcccgggaaggcgaacccggcatgataccgggctcgcagggatcgccctcttat
atcgtgcgcggcaagggcaacccgctctcgtttgcgtcgtgctcgcacggggccggtcgc
gtgatgagccgcaacgccgcccgccggaaactcgacctcaaagccgaacagcaaaagctc
gaaaagatgggcgtgctgcatgccgtacgcgggaagcgcgatcttgacgaggccccatcc
tcctacaaaaacatccggaaggttatggccaatcagcaggatttagtggaaatcgtaacc
gagctgaaacccctcgcggtcatcaaaggctaa
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