Colwellia psychrerythraea: CPS_0176
Help
Entry
CPS_0176 CDS
T00258
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cps
Colwellia psychrerythraea
Pathway
cps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPS_0176 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cps03021
]
CPS_0176 (rho)
03019 Messenger RNA biogenesis [BR:
cps03019
]
CPS_0176 (rho)
Transcription machinery [BR:
cps03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CPS_0176 (rho)
Messenger RNA biogenesis [BR:
cps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CPS_0176 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
AAA
Spore_III_AA
Mor
Motif
Other DBs
NCBI-ProteinID:
AAZ24621
UniProt:
Q48AG9
LinkDB
All DBs
Position
184591..185850
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKEKSINELVDLAATMKLENLARTRKQDIIFAILKAHAEGDNDIFGGGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFSMRTGDTIQGKIRSPKKGERYFALLKVTEVN
FDRPENTRNKILFENLTPIHPTDRFSLARGNGSTEDITARILDLASPIGKGQRGLIVAPP
KAGKTLLLQNIAQSIAHNNPDAELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKILTGGVDANALHRPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELHLSRKISEKRVFPAINI
NRSGTRREELITKPDELQKMWILRKIVHEMDEIGAIEFLIDKLAMTKTNDEFFDSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaaccttaccgaactgaaagaaaaatccattaatgaattggttgaccttgctgcgaca
atgaagcttgaaaaccttgctagaacacgtaaacaagacataatttttgctattttaaaa
gcacatgcggaaggcgataatgatattttcggcggcggtgttttagagattttacaagat
ggttttggtttcttacgctcggcagattcctcatacttagctggccctgatgatatttat
gtatcaccaagccaaattcgtcgttttagtatgcgaacgggtgacaccatccaaggtaaa
attcgttctcctaaaaaaggtgaacgttactttgccctattaaaagtgactgaagttaac
tttgaccgacctgaaaacacacgtaataagattttatttgaaaacttaacgcctattcat
ccaaccgatcgtttttcattggcgcgtggtaatggttcaacagaagatattaccgcacgt
attttagatttagcctcaccaattggtaaagggcaacgtggtttaatcgttgcgccacca
aaagccggtaaaactttattattacaaaacattgctcaaagtattgcgcacaataatcct
gacgcagagttaatggtattgttgatcgatgaacgtccagaagaagttacagaaatgcaa
cgccttgtaaaaggtgaagttattgcttcaacgttcgatgaaccagcaagtcgtcatgta
caagtggctgaaatggtaatcgaaaaagcaaaacgtttagttgaacacaaaaaagacgta
gttattttacttgattcaattacccgtttagcacgtgcttataacacggtaatcccatcg
tcaggtaaaatattgactggtggtgttgatgctaatgctctgcatcgtccaaagcgtttc
tttggtgctgcacgtaacattgaagaaggtggtagtttaactattatcgcaacagcactt
gtagaaactggttctaaaatggacgaagttatctacgaagaatttaaaggtacaggtaat
atggaattacacctgtctcgtaaaatttctgaaaagcgagttttcccagctattaacatt
aatcgtagtggtacacgtcgtgaagaacttattactaagccagatgaattacaaaaaatg
tggatcttacgtaaaatcgttcatgaaatggatgaaataggtgcgattgaattcctaatc
gacaaacttgcaatgaccaaaaccaatgatgagttttttgattcaatgaagcgtaaataa
DBGET
integrated database retrieval system
