Colwellia psychrerythraea: CPS_1125
Help
Entry
CPS_1125 CDS
T00258
Name
(GenBank) ATP-dependent RNA helicase, DEAD box family
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cps
Colwellia psychrerythraea
Pathway
cps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPS_1125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cps03019
]
CPS_1125
Enzymes [BR:
cps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CPS_1125
Messenger RNA biogenesis [BR:
cps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CPS_1125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
P-loop_SecA
CMS1
AAA_22
Cullin_binding
Motif
Other DBs
NCBI-ProteinID:
AAZ26044
UniProt:
Q486Z7
LinkDB
All DBs
Position
1147766..1149166
Genome browser
AA seq
466 aa
AA seq
DB search
MSDTPTKFTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGF
TLPLLQRLSSSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKI
NPQIARLRQGVDVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMT
ALPKDRQNLLFSATFSPEIRALAKGMVNNPLEISVDAENSTAEKVTQWLTAVDKKRKPAV
LTHLIKENNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGS
VKILVATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELD
LLWGIEHVIQQHIERKVIEKFIPANELGESRVIKPLKQGKPPKSAKPHGAGKGRVEHKDG
QRSGRNANGNNAGGNKAKPGNDSSRRKKPEYDGTGPKPRRAIRPTK
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgagtgataccccaaccaagtttactgatttaggcttatcagaagcattactaaaagca
gtacgtgataagggctatgaaacaccttctcctattcaagcccaagcgatcccagcagtt
atttctggtcgtgatgtcatggcagccgcacaaacaggtacgggtaaaacggcagggttt
actttgccattattacagcgcctttctagcagtaaaggtaacaaggtttcatctaacaac
gtaagagcgctaatattaacgcctactcgcgagttagctgcacaaataagcgagagcatt
gaggtttacggtaagtatttaaacttacactcaatggttgtttttggtggtgttaaaatt
aatccacaaatagcgcgtcttcgccagggtgttgatgtacttgtggcaacaccaggtcgt
ctattagatttatacaatcaaagagcagttaagtttagccaacttgaagtctttattctt
gatgaagctgatcgtatgttagatatgggctttattcgcgatattaaaaagttgatgaca
gctttgccaaaagaccgtcaaaacttactattctcagcaacattttcacctgagatacgt
gcattagctaaaggcatggtaaataacccattagaaatttcagttgatgcagaaaatagc
acagcagaaaaagtgactcaatggttaactgcggttgataaaaaacgcaaacctgctgta
ttaacgcacttaataaaagaaaataattggcaacaagtcttagtttttactaaaaccaaa
catggtgctaataagctaacaaagcatcttgaagctgaagggctaactgcggcggctatt
catggtaataaaagccaaggagcgcgtactaaagcacttgctgcctttaaagatggttca
gtgaaaatattagtagcaactgatattgcagcacgtggtattgatattgatttgttacca
caagtggttaatttcgacctacctaatgtacctgaggattatgttcatcgtattggtaga
acagcccgtgcaggtaataccggacaagcattatctctagtgtgtgccgatgaattagat
ttattgtggggcattgaacatgttattcagcagcacatcgaacgaaaagtgattgagaag
tttatacccgctaatgaattaggcgaatcacgtgttatcaaacctttaaaacaaggtaaa
ccaccaaaatcagcaaaacctcatggggcaggtaagggcagagttgagcacaaagatggt
caacgttcaggtcgtaatgctaacgggaacaatgcaggtggaaataaagcaaaaccgggc
aatgattcttctagacgtaaaaaacctgaatacgatggtactggtcctaaaccacgtaga
gctatacgccctacaaaataa
DBGET
integrated database retrieval system
