Colwellia psychrerythraea: CPS_1726
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Entry
CPS_1726 CDS
T00258
Symbol
deaD
Name
(GenBank) RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cps
Colwellia psychrerythraea
Pathway
cps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPS_1726 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cps03019
]
CPS_1726 (deaD)
03009 Ribosome biogenesis [BR:
cps03009
]
CPS_1726 (deaD)
Enzymes [BR:
cps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CPS_1726 (deaD)
Messenger RNA biogenesis [BR:
cps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CPS_1726 (deaD)
Ribosome biogenesis [BR:
cps03009
]
Prokaryotic type
rRNA helicases
CPS_1726 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AAZ24034
UniProt:
Q484Q1
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All DBs
Position
1775322..1777157
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AA seq
611 aa
AA seq
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MTDQKTETVTEPEAVAFASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQ
TGTGKTAAFGLPALAKIDTSIKKPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYG
GQSYGPQFQQLERGAQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQ
WILDHIPKTAQMCLFSATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQYAWKVSGIT
KMTALERIAEVVEYDAMIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQM
KSGKSSILVATDVVARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRP
REMYSIRHYERLTNGTVLNYDLPNIQDIGKIRIERTRVEVAKIVADKDISSMREIVEGMA
AESEVSMIDLAAALLFQKQMKQPLQPKEDPKPRRDARERTDRNDRGNDRNSRGNDRNSRG
NDSRSAGRDSRGGENRSNRDEKPRKAKVNRSDVDWQTYRLEVGKEHGARPGDIVGAIANE
ISLDSSYIGAINLHDKHSFVQLPKGIPTDLFNQLKGVRVRRQPLSITTSDEAVVSQQQRP
ARRTEKAPRHT
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcaaaaaactgaaactgtaacagaacctgaagctgtagcttttgcctcttta
ggcttacctgaaaacttattatctgccgttctttctattggctttacttctgctaccgat
attcaagcactaactataccaccattacttgctggtaaagatgtgttaggtgaagctcaa
acaggtacaggtaaaactgctgcctttggtttacctgcattagcaaaaattgatacttca
attaaaaaaccacaattaatggttttagcaccgactcgtgaattagcaatgcaagttgct
gaagcaatcgaatctttcggtaaagacatgaaaggtttacgtgttgctacattatacggt
ggccaatcttatggaccacaatttcaacaactagagcgtggcgcacaagttgttgttggt
actcctggtcgtttaatggaccacttacgtcgcaaaagccttaaattagatgaattacgt
gtttgtgtgcttgatgaagcagatgaaatgttaaacatgggctttttagaagacatccag
tggattttggatcatataccaaaaactgcacaaatgtgtttgttctctgcgaccatgcca
ccagcgattcgtaaaattgctaaccgtttcttaaaagatcctgagcacattaaagttgct
gctgttaaaaaagcaaaagctaacattactcagtacgcatggaaagttagtggcatcact
aaaatgactgcgttagagcgtattgctgaagtagttgaatacgatgcaatgattatcttt
gttcgtactcgtaacgatactgttgatattgctgaaaaattagaacgtgccggttaccct
gcattagcactaaatggtgatttgaaccaagcacaacgtgaacgttgtattgaccaaatg
aaatctggtaaatcatctatcctagttgctacagacgttgttgctcgtggtttggatatt
cctcgtatctctttggtaattaactatgacttaccgggcgataacgaagcatatgttcac
cgtattggtcgtactggtcgcgctggtcgtgaaggtatgtcaattgcttttgtacgtcca
cgtgaaatgtactcaattcgtcattatgagcgtttaacgaatggtactgttcttaattac
gatttaccaaatatccaagatattggtaaaatacgtattgagcgtactcgtgttgaagta
gcaaaaattgttgctgataaagatatctcaagcatgcgtgaaattgttgaaggcatggct
gctgaatctgaagtttctatgattgatcttgctgctgcattgcttttccaaaagcaaatg
aagcaaccacttcaaccaaaagaagatcctaagcctcgtcgtgatgcacgtgaacgtact
gatcgcaatgaccgtggtaacgaccgtaatagccgtggtaatgatcgcaatagccgtggt
aatgatagccgtagtgctggtcgtgattcacgtggtggtgagaaccgtagtaaccgtgat
gaaaaaccacgtaaagctaaagttaatcgcagtgatgttgattggcaaacttaccgccta
gaagtcggtaaagaacatggcgctcgtccaggtgatattgttggcgctatcgctaatgaa
atatcgcttgatagtagctacatcggtgctattaatttacatgacaaacatagttttgtt
cagttacctaaaggtatcccaactgacttgtttaaccagttgaaaggagtacgcgttcgt
cgtcaacctctttcaatcactacttcagatgaagcagttgttagccaacaacagcgtcca
gctcgtcgtactgaaaaagcaccacgtcatacttaa
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