Colwellia psychrerythraea: CPS_2658
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Entry
CPS_2658 CDS
T00258
Name
(GenBank) ATP-dependent RNA helicase, DEAD box family
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cps
Colwellia psychrerythraea
Pathway
cps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPS_2658
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cps03019
]
CPS_2658
Enzymes [BR:
cps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CPS_2658
Messenger RNA biogenesis [BR:
cps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CPS_2658
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AAZ26178
UniProt:
Q480Z7
LinkDB
All DBs
Position
2770110..2771309
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AA seq
399 aa
AA seq
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MSEFKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPI
INKFGRNKIDIKAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVD
SIELGLDILVATPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKS
RQTLLFSATMPAEIEILAEAILTDPTKIQITAETVTIDLVNQSVYHLDKSNKVPLLFNIL
TKADYEKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRVLV
ATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIRQLTNI
ENSIGQVIPVVTEQPFHKEFSKAPIQDKKKKQVKKTKRK
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaatttaaagcattttcacttttagagtcaattattgaccgcgttaatcttaaa
ggctacaaacagccaacaccgatccaaaaagaatgtatcccagcgcttataaatggcaat
gatcttcttggtatagcgcaaacgggaacaggaaaaactgcggccttttcattgcctatt
atcaataaatttgggcgaaataaaattgatattaaagctaagagcacgcgctcgctcata
ctaacgcccacaagagagcttgcctcgcaaataatgcaaaacattgatgactactctgat
ggcttggggcttaaaactaaggttgtttatggtggtgtaggaagacaagctcaagttgac
tctatcgaacttggacttgatattttagtggccacccctggaaggttattggatttaatt
gaaacgggcgatataaatttcaaggcgttagaagtatttgtgttagatgaagcagataca
atgcttgatatgggattctttaaggatgttcaaagtatcatatcgaaactgccaaagagc
cgacaaacactattattttcagctactatgcctgcggaaatagagatacttgcagaagcc
atattaacggacccaacaaaaattcaaattactgctgaaacggttactatcgacttggtt
aatcaaagtgtgtaccaccttgataaatcgaataaagtacccttgctatttaatatcctg
acaaaagctgactatgaaaaagtgctcatcttttgtaaaacaaagtatggcgctgacatc
attgttaaagcactagaaaaggcatcaataactgccgctagcctgcacagtggtaaaaca
caagcagttagggaggaagcgttacaaaactttaaagactctactttaagagtattagtt
gcaactgatgttgctgctcgtggaattgatgttgataatattacgttagtcattaactat
aaccttcctgaagatccaagaaactacatacaccgtataggacgaactgctcgtgccggg
aaaagtggtatggctatttcatttgctgtagaaaatgatataaggcaattaactaatatt
gaaaatagcatagggcaagtcattcctgttgttacagaacagcctttccataaagagttt
tcaaaagcgcctatacaagacaagaaaaagaaacaggttaaaaaaacaaagagaaaataa
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