Colwellia psychrerythraea: CPS_3781
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Entry
CPS_3781 CDS
T00258
Symbol
hupB3
Name
(GenBank) DNA-binding protein, HU family
KO
K03530
DNA-binding protein HU-beta
Organism
cps
Colwellia psychrerythraea
Brite
KEGG Orthology (KO) [BR:
cps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cps03032
]
CPS_3781 (hupB3)
03036 Chromosome and associated proteins [BR:
cps03036
]
CPS_3781 (hupB3)
03400 DNA repair and recombination proteins [BR:
cps03400
]
CPS_3781 (hupB3)
DNA replication proteins [BR:
cps03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
CPS_3781 (hupB3)
Chromosome and associated proteins [BR:
cps03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
CPS_3781 (hupB3)
DNA repair and recombination proteins [BR:
cps03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
CPS_3781 (hupB3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
NolB
HU-CCDC81_euk_2
HU-DNA_bdg
Motif
Other DBs
NCBI-ProteinID:
AAZ27353
UniProt:
Q47XM2
LinkDB
All DBs
Position
complement(3946071..3946343)
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AA seq
90 aa
AA seq
DB search
MNKSQLIEKIAAGADISKAAAGRALDSFIGAVTDELKDGEQVALVGFGTFSVRDRAARTG
RNPQTGATIQIAAAKIPSFKAGKALKDACN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
gtgaataaatctcaactaatcgagaaaattgctgctggtgcagacatttcaaaagctgct
gcgggtcgtgcattagattcatttattggcgctgtaactgatgaattaaaagatggcgag
caagttgctcttgttggttttggtactttctctgtacgtgaccgtgctgctcgtactggt
cgtaacccacaaacgggtgctactatccaaatcgctgctgcaaaaattccatctttcaaa
gctggtaaagcattaaaagacgcatgtaactag
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