Colwellia psychrerythraea: CPS_4094
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Entry
CPS_4094 CDS
T00258
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cps
Colwellia psychrerythraea
Pathway
cps03410
Base excision repair
cps03430
Mismatch repair
cps03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CPS_4094 (recJ)
03430 Mismatch repair
CPS_4094 (recJ)
03440 Homologous recombination
CPS_4094 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cps03400
]
CPS_4094 (recJ)
DNA repair and recombination proteins [BR:
cps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CPS_4094 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CPS_4094 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CPS_4094 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
TADA2A-like_3rd
N_Asn_amidohyd
Motif
Other DBs
NCBI-ProteinID:
AAZ27994
UniProt:
Q47WS3
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Position
complement(4308214..4309968)
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AA seq
584 aa
AA seq
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MSKTIVRRVKVATDHLPDNLPEIIKQIYASRGMESAQELELNVAHLQGMVDETALMGMDK
ACQLLHDALVNKLRIVIVGDFDADGATSTALMMTALSLFNSNNHDFIVPNRFEYGYGLTP
EIVDIAAQQNTQMLITVDNGISCIAGVKRAKDLGMQVIVTDHHLPGHSLPIADAIVNPNQ
HGCNFPSKALAGVGVAFYLMLALRKYCREQNYFSEQGIAEPNIAQLLDLVALGTVADVVS
LDANNRILVEQGLKRIRAGKTRPGIQALIEIANKNQQRLVASDFGFALGPRINAAGRLDD
MSYGINCLLATDLSSARVMAAELDDLNKTRREIEQGMQAEAEQVLTSLKFDEDNLPNAIA
LYQQDWHQGVIGIVAGRLKEKFHRPCIVFANGKDDDSVDVSEREIKGSARSIPGLHIRDL
LEHIDSQHPDIILKFGGHAMAAGLSIKHGNFARFQQLFNELAGKWLKEEDLQSIILSDGE
LMLEHLSLDFAEKLRDAGPWGQNFPEPLFDDTFKLVQQRIVGEKHLKIVVEKQGEIFDGI
AFNVDVKTWPNAQVKQVHLAYRLDVNEFRGKRTVQFMVENITAI
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaacaattgttcgccgagtgaaagtagctaccgaccatttgcctgataaccta
cctgaaatcataaaacaaatttatgctagccgtggtatggaatctgcacaagagcttgaa
cttaatgttgctcatctacaaggtatggtcgatgaaacagcgcttatgggcatggacaaa
gcttgtcagttattacatgacgcgctagtgaataaattacgtattgttattgttggagat
tttgatgccgacggtgcgactagtactgctttaatgatgactgcattgagcctgtttaac
agtaacaatcatgactttattgtgccaaatcgttttgaatatggctacggcctaacccct
gagattgttgacattgcagcacagcaaaatacgcaaatgttaataacggtggataatggc
atcagttgtattgccggtgttaaacgtgcaaaagatttaggtatgcaggtaattgttacg
gatcatcacttgccaggacattcattacccattgccgacgccattgttaaccctaatcag
catggttgtaactttccgagtaaagctcttgctggcgtgggggtagctttttacttaatg
ctagctttaagaaagtattgccgtgagcaaaactatttttcagagcaaggtattgctgag
cctaatattgctcaactattagatttggttgctttaggtactgtggccgatgtggtttca
ttggatgctaataaccgaattttagtagaacaaggcttgaagcgtattcgtgcagggaaa
actagacctggcattcaagcgcttattgaaattgcgaataaaaatcagcaaaggctcgtt
gccagtgattttggttttgccctcggcccgagaattaatgctgcaggtcggttagatgat
atgtcttatggtattaactgtttacttgctactgatttgtctagtgctcgtgtgatggct
gcagagcttgatgatctcaataaaacacgcagagaaatagagcagggtatgcaagccgaa
gctgagcaagtacttacttctctcaagtttgatgaagataatctacctaatgcgattgcc
ctttatcaacaagactggcatcaaggtgttatcggtattgttgctggcaggttaaaagag
aaatttcatcgtccttgtattgtttttgctaatggcaaagatgatgactcagttgatgtt
tccgagagagaaattaaaggctcggcgcgttctattcctggcctgcatattcgagactta
ttagagcatattgacagtcaacacccagatattattcttaagtttggtggccatgcaatg
gcggcaggtttatctataaaacacggtaactttgcgcgttttcagcaactatttaatgaa
ttagcgggtaaatggttaaaagaagaagatttgcagagtattattttatctgatggcgag
cttatgcttgaacatcttagtttagattttgccgaaaaattgcgagacgctggtccttgg
gggcaaaacttccctgagccattatttgatgacacttttaaattggtacagcagcgtatt
gttggcgaaaagcatcttaaaatagtggtagaaaaacagggagaaatctttgatggtatt
gcttttaatgttgatgttaagacttggccgaacgctcaagtaaaacaggtacatttagct
taccggttagatgttaatgaatttcgtggtaaacgcacggtgcaattcatggttgaaaat
atcacagctatttag
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