Colwellia psychrerythraea: CPS_4122
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Entry
CPS_4122 CDS
T00258
Symbol
rnc
Name
(GenBank) ribonuclease III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
cps
Colwellia psychrerythraea
Pathway
cps03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cps00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
CPS_4122 (rnc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cps03019
]
CPS_4122 (rnc)
03009 Ribosome biogenesis [BR:
cps03009
]
CPS_4122 (rnc)
03036 Chromosome and associated proteins [BR:
cps03036
]
CPS_4122 (rnc)
Enzymes [BR:
cps01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
CPS_4122 (rnc)
Messenger RNA biogenesis [BR:
cps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CPS_4122 (rnc)
Ribosome biogenesis [BR:
cps03009
]
Eukaryotic type
90S particles
RNase
CPS_4122 (rnc)
Prokaryotic type
rRNA processing factors
CPS_4122 (rnc)
Chromosome and associated proteins [BR:
cps03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
CPS_4122 (rnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
RM44_endonuclase
DND1_DSRM
DSRM_DCL2
Motif
Other DBs
NCBI-ProteinID:
AAZ27454
UniProt:
Q47WP5
LinkDB
All DBs
Position
complement(4337947..4338747)
Genome browser
AA seq
266 aa
AA seq
DB search
MKINPHNLARLTKKLGYEFNEPLLLVQALTHRSAKGAHNERLEFLGDSILGFVIAEALYD
KFPKHDEGDLTRMRSSLVKGVTLAEVARDFNLGECLILGPGELKSGGHHRESILEDAIEA
IIGAVYLDSNIECCKALILSWFERRLMVIKPGNEQKDPKTRLQEFLQGRKIPLPTYEVID
TTGQSHNQEFTVRCQTSVISEVVIAKGTSRRKAEQEAAQQILALIEKEREQEKEVKIKPT
KQAKLANPRHTKSNPSSSSKKSSTRK
NT seq
801 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaattaaccctcacaatcttgctagattaaccaaaaagcttggttatgaatttaat
gaaccattattattggtgcaagcacttacacatcgaagtgccaagggcgctcataatgaa
agactagagttcctcggggactctattttaggttttgttattgctgaagcgctttatgat
aaatttccaaagcatgacgaaggcgatcttactcgcatgcgttctagcctagttaaaggg
gtaacgttagctgaagttgcacgagactttaacttgggtgagtgcttaatattagggcca
ggtgaattaaaaagtggcggtcatcatcgtgaatctatattagaagatgcgattgaagcc
attattggtgctgtatatttagattcaaatatcgagtgttgtaaagcacttatcttaagt
tggtttgaaagacgcttgatggtgattaaaccgggtaatgaacaaaaagaccctaaaact
cgcctgcaagaatttttacaaggaagaaagatccctcttcctacttacgaagtaattgat
acaacgggacaatcacataaccaagaatttaccgttcgttgccaaacgtcagtgatcagt
gaagtagttatcgctaaaggaacaagtcgtcgaaaagcagagcaagaagctgcgcagcag
atacttgctttaattgaaaaagaaagagaacaagaaaaagaagtaaaaataaaaccaaca
aaacaagctaaattagcaaatccccgacatactaaaagtaacccaagcagctcaagcaaa
aaaagcagcacgagaaaataa
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