Colwellia psychrerythraea: CPS_4955
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Entry
CPS_4955 CDS
T00258
Name
(GenBank) exonuclase
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
cps
Colwellia psychrerythraea
Pathway
cps03030
DNA replication
cps03430
Mismatch repair
cps03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CPS_4955
03430 Mismatch repair
CPS_4955
03440 Homologous recombination
CPS_4955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cps03032
]
CPS_4955
03400 DNA repair and recombination proteins [BR:
cps03400
]
CPS_4955
Enzymes [BR:
cps01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CPS_4955
DNA replication proteins [BR:
cps03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CPS_4955
DNA repair and recombination proteins [BR:
cps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CPS_4955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DEDDh_C
RNase_H_2
CAF1
VRP1
Motif
Other DBs
NCBI-ProteinID:
AAZ28006
UniProt:
Q47UC9
LinkDB
All DBs
Position
5258738..5259424
Genome browser
AA seq
228 aa
AA seq
DB search
MFGWLLGYEAKRKQLLKKAPEGALRDYLSVPLPDINTRIDKVEILAVDFETTGLNAKQDK
LLSVGFLTLKKQQMSLKTSYHQIIKTKAQLEESNVIIHHITDSQKEQGQALAIVVEALLK
ALAGKVMLVHFARIERQFLAEACYELYGMAPIFPMIDTLALAKRRLDKRDVAYDPSELRL
TNLRNNFQLPEHHAHNALNDAIATAELFMAQMSKANKDGKTTLKDVLL
NT seq
687 nt
NT seq
+upstream
nt +downstream
nt
atgttcggctggttacttgggtatgaagccaagcgtaagcagttgttgaaaaaggcgcct
gaaggcgcattacgagattatttatccgtacctttacctgatataaatacccgcattgat
aaggtagaaatcttagcggtcgatttcgaaacaaccggccttaatgccaaacaagacaag
ctactgagtgttggttttctcacactgaaaaaacagcaaatgtcactcaaaacaagctat
caccaaatcatcaaaactaaagcacaacttgaagaaagtaatgtcattattcatcacatt
accgacagccaaaaagaacagggacaagcattagcgatagtggttgaagcattattaaaa
gctttagcgggtaaagtaatgctggtacattttgcccgtattgaaagacagtttttggct
gaagcttgttatgagttatatggcatggcaccgatttttcccatgatagatacccttgca
ctggctaaacgtcgtttagataaacgtgatgtggcctatgatccatcagaattacgtctg
actaacttacgcaataattttcagctacccgaacaccatgcccataatgcattaaatgac
gcgattgctaccgctgaattatttatggcacaaatgagcaaagccaataaagacggtaaa
acaacacttaaagatgttttattgtaa
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