Colwellia psychrerythraea: CPS_4978
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Entry
CPS_4978 CDS
T00258
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
cps
Colwellia psychrerythraea
Pathway
cps03030
DNA replication
cps03410
Base excision repair
cps03420
Nucleotide excision repair
cps03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CPS_4978 (polA)
03410 Base excision repair
CPS_4978 (polA)
03420 Nucleotide excision repair
CPS_4978 (polA)
03440 Homologous recombination
CPS_4978 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cps03032
]
CPS_4978 (polA)
03400 DNA repair and recombination proteins [BR:
cps03400
]
CPS_4978 (polA)
Enzymes [BR:
cps01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CPS_4978 (polA)
DNA replication proteins [BR:
cps03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CPS_4978 (polA)
DNA repair and recombination proteins [BR:
cps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
CPS_4978 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CPS_4978 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
AAZ25350
UniProt:
Q47UA6
LinkDB
All DBs
Position
complement(5288747..5291557)
Genome browser
AA seq
936 aa
AA seq
DB search
MTISATTQDSNNSQSPLILVDGSSYLFRAYHVPYLQALSTADGQPTGAITGVLNMFRSLK
KDYPNGNIIAIFDAKGKTFRNDMFPEYKANRPPMPDDLRTQIAPIHEIITAMGLPLLVIP
GVEADDVIGTLAKQADELGIETVISTGDKDMAQLVTKHVRLINTMTDVEMDVAGVSEKFG
VRPDQIIDYLALMGDKVDNIPGVVKCGPKTAVKWLAEHGTMQEVIANADKVKGKIGENLR
DALEQLPLSYQLATIKCDVELEQTAGELAASEPDVDALAELYQKFELKRLLADLGKGGSD
VGASTSSVAKKTKADSTASVGEQAVEIKAVDVEKTQYDIILDKELFEQWLKKLQACESFA
FDTETTSVHYMKAELVGVSFAIEVGKAAYVPLTHDYEDAPEQLDKEWVLAQLKPLLESKT
IKKIGQNLKYDANVLSHYDIALQGIEFDTMIESYCYNSVATRHNMDALALKYLDYQTVHF
EDVAGKGAKQLTFNQIDIEKAGHYAAEDADITLRLHHAIFPALAETASMLSVFNEIEMPL
LPVLARMEQTGVLIDSDILAEQSFTLGQRLDELEIEAHNLAGKSFNLASPKQLQQILFED
LKIPVIKKTPKGAPSTAEEVLQELALDYPLPKVILENRGLSKLKSTYTDKLPLMVSDKTN
RLHTSYHQAVTATGRLSSTDPNLQNIPIRSEQGRKIRQAFIAPKDHKIVAIDYSQIELRI
MAHLSNDKGLVTAFSEGKDIHRATAAEIFAVELGEVTTDQRRSAKAINFGLIYGMSAFGL
AKQLHIGRQQAQEYQDKYFQRYPGVLTYMEDTRQQASEQGYVETLYGRRLYLPDINAKNG
MRKKAAERAAINAPMQGTAADIIKKAMLAVDSWLLEQNDDRIKMTMQVHDELIFEIHQDI
VEETTAKLVTLMNDAVELSVPLIAEAGIGDNWDEAH
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgacaatttctgcaaccacccaagactctaataactcgcaatcacccttaatattggtc
gatggttcatcgtatttatttcgagcctatcacgtaccttatttgcaagctctttcaacc
gctgatggtcaacctacgggagctattactggtgtattgaatatgtttcgtagtttaaaa
aaagactaccccaatggcaatatcatcgctattttcgatgctaaaggtaaaacatttcgt
aatgacatgtttcccgaatacaaagccaatcgtccaccaatgcctgatgatttacgtact
caaattgcaccaatacatgagattattacagcaatgggtttgccacttttagttattccg
ggtgttgaggccgatgatgttattggtacattggcaaaacaagctgatgagcttggtatt
gaaaccgttatttcgaccggcgataaagacatggcgcagcttgttactaagcatgttcgt
ttgattaataccatgaccgatgtagaaatggatgttgctggcgttagtgaaaagtttggt
gttagacctgatcaaattatcgactatcttgcattaatgggggataaagttgataacatt
cctggcgttgttaagtgtggtcccaaaactgccgttaaatggttagcagaacatggcacc
atgcaggaagttattgccaatgcggacaaagtaaaaggcaagattggtgaaaatcttcgt
gatgcattagaacaactgccattgtcttatcaattagccactattaaatgtgatgttgaa
ttagaacaaacggctggagaattagcggctagtgaaccagacgtagacgcattagctgaa
ctttatcaaaagttcgaactaaaacgtttgttagctgacttaggtaaaggtggaagtgac
gttggcgcgagcactagtagcgtagctaaaaaaactaaagcagactctacagcttcggtg
ggcgagcaggccgttgaaattaaagctgtagacgttgaaaaaactcaatacgatattatt
ttagacaaagagctttttgaacagtggttgaaaaagttacaagcgtgcgagtcttttgct
tttgatactgaaaccactagtgttcattatatgaaggctgaactagtcggagtatcgttt
gctattgaagtggggaaagctgcttatgtaccattgactcatgattatgaagatgcccct
gagcaacttgataaagagtgggtattagcgcaattaaaaccgttactcgaaagtaaaacc
attaaaaagattggtcaaaatcttaagtatgatgccaatgtattaagccattatgatatt
gctttgcaaggcatcgagtttgataccatgatcgagtcttattgttataacagtgttgct
acccgacataatatggatgcattagcactgaaatatcttgattatcaaaccgtgcatttt
gaagatgtagcaggtaaaggtgctaaacaacttactttcaaccaaattgacattgaaaaa
gcgggtcactatgccgcggaagatgcggatatcaccttgcgattacatcacgctattttc
cccgcgttagcagaaaccgcttcaatgttaagtgttttcaatgaaatcgagatgccatta
ttacctgtactggcccgcatggagcaaaccggtgtattaattgatagtgatatcttagct
gaacaaagctttaccctaggtcagcgtttagatgaactagaaattgaagcacataattta
gcaggtaaaagctttaacttggcatcaccgaagcaattacagcaaattctttttgaagat
ttaaaaatcccggtcatcaaaaagacacccaaaggtgctccttcaacagcagaagaagta
ttgcaagagttagcgctcgattacccattacccaaggttattttggaaaatcgaggactt
agtaaactgaagtcgacgtacaccgacaagttaccattaatggtgagcgataaaactaat
cgtttgcatacttcgtatcatcaggcggttacggcaacagggcgtttatcttcaaccgat
ccaaacttgcagaacattccaattcgcagcgaacaaggccgcaaaattcgccaagctttt
attgcaccaaaagatcataaaatagtcgcgatagattactctcaaattgaattacgcata
atggcacatttgtcgaacgataaaggtttagtcactgcctttagcgaaggtaaagatatc
catcgcgcgacagcggcagaaatctttgctgttgaacttggtgaggttactaccgatcaa
cgacgtagtgctaaagctattaactttggtttaatttacggtatgtcagcatttggttta
gccaagcagctccatattggtcgtcagcaggcgcaagagtaccaagataaatatttccag
cgttaccctggtgtattaacgtatatggaagatactcgtcaacaagcgagtgagcagggc
tatgttgaaaccttatatggtcgtcgattatatctacctgatattaatgctaaaaatggt
atgcgtaaaaaagcggccgagcgagctgcaatcaatgcaccgatgcaaggaaccgctgcg
gatattattaaaaaggccatgttagccgtagattcatggttacttgagcaaaatgatgac
cgtataaaaatgactatgcaagttcacgatgaactgatttttgaaattcatcaagatatt
gttgaagaaaccacagctaaattggtgacgttaatgaatgatgcggtagagctgagtgtg
ccattaattgcagaggctggcattggcgataactgggatgaggcgcattaa
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