Chlamydia psittaci 84/55: B595_1001
Help
Entry
B595_1001 CDS
T02308
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cpsb
Chlamydia psittaci 84/55
Pathway
cpsb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpsb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B595_1001 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpsb03400
]
B595_1001 (mfd)
Enzymes [BR:
cpsb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B595_1001 (mfd)
DNA repair and recombination proteins [BR:
cpsb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B595_1001 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
DUF3638
ERCC3_RAD25_C
AAA_30
RecG_dom3_C
ADDB_N
AAA_19
PhoH
Motif
Other DBs
NCBI-ProteinID:
AFS19952
LinkDB
All DBs
Position
1003869..1006949
Genome browser
AA seq
1026 aa
AA seq
DB search
MISLKIFLHFLGFPPVEFPSSEIDLSPKLVNIDAVGKRDKVLYDLYQKKAPIFCVTTLKA
LLEKTRSPKDTAHQHLDIQVGDVLDPDIMIDLCKNLGYRHETLASDKGEFAYRGGIIDIF
PLSSPEPFRIEFWGEKIISIRPFNPSDQLSTGKVSKLSISPATKNSGTEVLSHCLLDYFD
TPPAFLFDNLTLLEDDFSEISGTLSSLPNRFLPIQDLCRRAFQSQTIFFEEKNFPNVRTI
KNTQVNIEVFHCDIQASRLVAPFIYPNEVIDEQENPLLGFLQKLQEYIPNKGQPFNVALY
NTKAKSLKEARALIETLSQSSIHIYEKPGNLSSSFALVNERFAAISLAEFASTKVLRRQK
QRNYFSVTTEEVFVPIPGETVVHLHNGIGKFIGMEKKPNHLNIETDYLVLEYADKARLYV
PSDQAYLISRYVGVSDKTPDLHNLNGSKWKRSRDLSEKSLILYAEKLLQLEAQRSTTPSF
IYPPHGEEVIKFEESFPYEETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRA
AVKAVCDGQRQVIVMVPTTILANQHYETFTQRMAGLPINIAVLSRFSEGKALKKIFEDTA
QGNIDILIGTHKLINKNLEFKNPGLLIIDEEQRFGVKVKDFLKERYPTIDCLTVSATPIP
RTLYMSLSGARDLSLITMPPLDRLPVSTFVLEHNEETLSAALRHELLRGGQAYVIHNRIE
SIFRLGNTIRNLVPEARIAVAHGQMSSDELASIFQKFKDQETNVLVATALIENGIDIPNA
NTILVDQADKFGMADLYQMKGRVGRWNRKAYCYFLVSHLDRLSGPAAKRLQALNKQEYGG
GMKIALHDLEIRGAGNILGTDQSGHISAIGFNLYCKLLKKTVAALKNNSSPLLFNDDVKI
EFPYKSRIPDTYIDLASLRIEFYQKIGGAEDAEQLDLIKEEMRDRFGPLPEEVLWLFALA
HVRLFALQYNISSIKGTGNALYIQQCHGKTEQIKKTLPYSLSPTPELLVAEVLESIEKAF
PLKTPR
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgatctctttgaagatctttcttcattttttaggattccctcctgtggagtttccttca
tcagaaatagacttatctccaaagcttgttaatatcgatgctgttgggaaacgtgataag
gttctttacgatttgtatcagaaaaaagcccctatattttgtgtaacaacactaaaagct
ttactagagaaaactcgatcaccaaaagatacagctcaccaacatttagatatccaagtt
ggagatgttcttgatcctgatatcatgatcgatctatgtaaaaatttaggttatcgccat
gaaactcttgccagcgataagggagagtttgcttatagaggagggattattgatatcttt
cctctatcttctccagaacctttccggatagagttttggggagaaaagatcatctcaata
cgtccttttaatccatctgatcaactctcaacagggaaagtttccaagctgtctatatcc
ccagccacaaaaaattcggggacagaagttttatcacactgcctattggattattttgat
acacccccagcatttctcttcgataatttaaccttgttagaagatgatttctcggagatt
tcagggacgttgtcttcgctacctaaccgttttctacctatccaagatttatgtcgacgt
gcttttcaatctcagacgattttctttgaagagaaaaacttccctaatgttcgtacaatt
aaaaatacccaagtaaacattgaagtcttccactgcgacattcaagcttcccgacttgtt
gctccttttatctatcctaacgaagttatcgacgaacaagaaaatccccttcttggtttt
ctacaaaagcttcaagaatatatccctaacaaaggacaaccgtttaacgtagccctctac
aatacaaaagcaaaatctttaaaagaagctcgggctctaatagaaacgctaagccagagc
tctatacatatctatgaaaaacctgggaatctctcttctagctttgctcttgtaaacgaa
agatttgctgctatttccctagcggaatttgcttctacaaaagtattgcgaaggcaaaaa
cagagaaattatttttccgtaactactgaagaagtattcgttcctattcctggagagaca
gttgttcatttacacaatggtattggcaaatttatcggaatggaaaagaagccaaaccat
ttaaatattgaaactgactatctagttcttgaatatgccgacaaagcacggctgtatgtg
ccttcagaccaagcctatctgatttcacgttacgtaggagtttctgacaaaactcctgac
cttcataatctaaatggctctaaatggaaacgatctcgagatctctctgaaaagtctctt
atattatatgctgagaaactccttcagctcgaagcacagcgttccacgactccttcattt
atttatcctccccatggagaagaggtaattaaattcgaagagagctttccttatgaagaa
actccagatcaattgaaagcgattgagcaaatctattccgatatgatgtccgataagctc
atggaccgtttaatttgcggtgatgcaggattcggaaagacggaagtcattatgcgagct
gctgtgaaagcggtttgtgatggtcagcgacaggttattgttatggtccccacaaccatt
ctagcaaatcagcattacgaaactttcacccaacgtatggcagggttaccgataaatatt
gctgttctttcgcgcttttctgaagggaaggctctgaaaaaaatctttgaggatacagct
caaggcaatattgatattttaatcggcacacacaagttaataaataaaaacttagaattc
aaaaatcctggtttattgattattgatgaggaacaacgttttggtgttaaagttaaagat
ttcctcaaggaacgttaccctacgatagactgtctcacagtatcagctacacctattccg
agaacattatacatgtctttgtcgggagccagggacctctctttgattaccatgcctcca
ttagatagactgcctgtttctacttttgttttagaacacaatgaagaaactctatctgca
gccttacggcacgaattattgcgaggtggtcaagcatacgtaattcataatcgtattgag
agcatttttagattagggaatacaatacggaacttggtaccagaagcacgtattgctgtt
gctcatggccaaatgtcttcagatgagttagcttctatttttcaaaaatttaaggatcaa
gaaaccaatgtccttgtagcaacagcacttatagaaaatggtatcgatattcctaatgcc
aatacgattttagtcgaccaagcagataaatttggcatggctgatctgtatcagatgaaa
ggtcgtgtaggaagatggaatagaaaagcttactgttattttttagtttcccatttagat
agattatctggtcctgctgcaaaacgtttacaagctttgaataaacaagaatatggagga
ggaatgaagatcgctctccatgatttagaaattcgtggcgcaggaaatattttaggaacc
gatcaatccgggcatatcagtgcgattggattcaacctctactgtaagttattgaaaaaa
acggttgctgctttaaagaacaactcttctcctttattattcaacgatgatgtaaaaata
gagtttccttataaatcccgcatacctgatacctatatagatttggcgtctctgcgtata
gaattttaccagaaaatcggtggtgctgaagatgccgaacagttagatttgataaaagaa
gagatgcgcgatcgcttcgggcctctacccgaagaggtcttatggttatttgcattagct
cacgtacgtctatttgctctacaatacaatatttctagcattaaaggtacggggaatgct
ttgtatattcaacaatgtcatggaaaaaccgagcaaataaagaaaacattaccctattct
ttatctcccaccccagaactcctggtagctgaagtgttagaatctatagagaaagcattt
cctctaaaaacccctcgttaa
DBGET
integrated database retrieval system
