Chlamydia psittaci CP3: B711_0995
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Entry
B711_0995 CDS
T02251
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cpsc
Chlamydia psittaci CP3
Pathway
cpsc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B711_0995 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpsc03400
]
B711_0995 (mfd)
Enzymes [BR:
cpsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B711_0995 (mfd)
DNA repair and recombination proteins [BR:
cpsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B711_0995 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
DUF3638
AAA_30
ADDB_N
AAA_19
ERCC3_RAD25_C
PhoH
Motif
Other DBs
NCBI-ProteinID:
AFS27380
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Position
999825..1002440
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AA seq
871 aa
AA seq
DB search
MDFDPVNLNLSILPEITNTSVPLLIENILPGARSFLAAKFFYERKESVVTITTRSRIDDL
FEDLSSFLGFPPVEFPSSEIDLSPKLVNIDAVGKRDKVLYDLYQKKAPIFCVTTLKALLE
KTRSPKDTAHQYLDIQVGDVLDPDIMIDLCKNLGYRHETLASDKGEFAYRGGIIDIFPLS
SPEPFRIEFWGEKIISIRPFNPSDQLSTGKVSKLSISPATKDSGTEVLSHCLLDYFDTLP
AFLFDNLTLLEDDFSEISGTLSSLPNRFLPIQDLCRRAFQSQTIFFEEKNFPNVRTIKNT
QVNIEVFHCDIQASRLVAPFIYPNEVIDEQENPLLGFLQKLQEYIPNKGQPFNVALYNTK
AKSLKEARALIETLSQSSIHIYEKPGNLSSSFALVNERFAAISLAEFASTKVLRRQKQRN
YFSVTTEEVFVPIPGETVVHLHNGIGKFIGMEKKPNHLNIETDYLVLEYADKARLYVPSD
QAYLISRYVGVSDKTPDLHNLNGSKWKRSRDLSEKSLILYAEKLLQLEAQRSTTPSFIYP
PHGEEVIKFEESFPYEETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAVK
AVCDGQRQVIVMVPTTILANQHYETFTQRMAGLPINIAVLSRFSEGKALKKIFEDTAQGN
IDILIGTHKLINKNLEFKNPGLLIIDEEQRFGVKVKDFLKERYPTIDCLTVSATPIPRTL
YMSLSGARDLSLITMPPLDRLPVSTFVLEHNEETLSAALRHELLRGGQAYVIHNRIESIF
RLGNTIRNLVPEARIAVAHGQMSSDELASIFQKFKDQETNVLVATALIENGIDIPNANTI
LVDQADKFGMADLYQMKGRVGRWNRKAYCYF
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atggatttcgacccagttaatttaaacctatctattttacctgaaataactaacacctct
gttccattactaatagaaaatatccttcctggggctcgtagtttcttagctgctaagttt
ttctacgagaggaaagagtctgtggtaacgattaccacgcgctctcgtattgatgatctc
tttgaagatctttcttcatttttaggattccctcctgtggagtttccttcatcagaaata
gacttatctccaaagcttgttaatatcgatgctgttgggaaacgtgataaggttctttac
gatttgtatcagaaaaaagcccctatattttgtgtaacaacactaaaagctttactagag
aaaactcgatcaccaaaagatacagctcaccaatatttagatatccaagttggagatgtt
cttgatcctgatatcatgatcgatctatgtaaaaatttaggttatcgccatgaaactctt
gccagcgataagggagagtttgcttatagaggagggattattgatatctttcctctatct
tctccagaacctttccggatagagttttggggagaaaagatcatctcaatacgtcctttt
aatccatctgatcaactctcaacagggaaagtttccaagctgtctatatccccagccaca
aaagattcggggacagaagttttatcacactgcctattggattattttgatacactccca
gcatttctcttcgataatttaaccttgttagaagatgatttctcggagatttcagggacg
ttgtcttcgctacctaaccgttttctacctatccaagatttatgtcgacgtgcttttcaa
tctcagacgattttctttgaagagaaaaacttccctaatgttcgtacaattaaaaatacc
caagtaaacattgaagtcttccactgcgacattcaagcttcccgacttgttgctcctttt
atctatcctaacgaagttatcgacgaacaagaaaatccccttcttggttttctacaaaag
cttcaagaatatatccctaacaaaggacaaccgtttaacgtggccctctacaatacaaaa
gcaaaatctttaaaagaagctcgggctctaatagaaacgctaagccagagctctatacat
atctatgaaaaacctgggaatctctcttctagctttgctcttgtaaacgaaagatttgct
gctatttccctagcggaatttgcttctacaaaagtattgcgaaggcaaaaacagagaaat
tatttttccgtaactactgaagaagtattcgttcctattcctggagagacagttgttcat
ttacacaatggtattggcaaatttatcggaatggaaaagaagccaaaccatttaaatatt
gaaactgactatctagttcttgaatatgccgacaaagcacggctgtatgtgccttcagac
caagcctatctgatttcacgttacgtaggagtttctgacaaaactcctgaccttcataat
ctaaatggctctaaatggaaacgatctcgagatctctctgaaaagtctcttatattatat
gctgagaaactccttcagctcgaagcacagcgttccacgactccttcatttatttatcct
ccccatggagaagaggtaattaaattcgaagagagctttccttatgaagaaactccagat
caattgaaagcgattgagcaaatctattccgatatgatgtccgataagctcatggaccgt
ttaatttgcggtgatgcaggattcggaaagacggaagtcattatgcgagctgctgtgaaa
gcggtttgtgatggtcagcgacaggttattgttatggtccccacaaccattctagcaaat
cagcattacgaaactttcacccaacgtatggcagggttaccgataaatattgctgttctt
tcgcgcttttctgaagggaaggctctgaaaaaaatctttgaggatacagctcaaggcaat
attgatattttaatcggcacacacaagttaataaataaaaacttagaattcaaaaatcct
ggtttattgattattgatgaggaacaacgttttggtgttaaagttaaagatttcctcaag
gaacgttaccctacgatagactgtctcacagtatcagctacacctattccgagaacatta
tacatgtctttgtcgggagccagggacctctctttgattaccatgcctccattagataga
ctgcctgtttctacttttgttttagaacacaatgaagaaactctatctgcagccttacgg
cacgaattattgcgaggtggtcaagcatacgtaattcataatcgtattgagagcattttt
agattagggaatacaatacggaacttggtaccagaagcacgtattgctgttgctcatggc
caaatgtcttcagatgagttagcttctatttttcaaaaatttaaggatcaagaaaccaat
gtccttgtagcaacagcacttatagaaaatggtatcgatattcctaatgccaatacgatt
ttagtcgaccaggcagataaatttggcatggctgatctgtatcagatgaaaggtcgtgta
ggaagatggaatagaaaagcttactgttatttttag
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