Corynebacterium pseudotuberculosis 48252: CPTA_01366
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Entry
CPTA_01366 CDS
T03482
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
cpse
Corynebacterium pseudotuberculosis 48252
Pathway
cpse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPTA_01366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpse03019
]
CPTA_01366
03009 Ribosome biogenesis [BR:
cpse03009
]
CPTA_01366
Messenger RNA biogenesis [BR:
cpse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CPTA_01366
Ribosome biogenesis [BR:
cpse03009
]
Prokaryotic type
rRNA helicases
CPTA_01366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
adh_short
Motif
Other DBs
NCBI-ProteinID:
AIG07195
UniProt:
A0A5C2NPS7
LinkDB
All DBs
Position
1413640..1415622
Genome browser
AA seq
660 aa
AA seq
DB search
MSITDDATGGANEPDEKILSESQDNSQVDEGSITLDDVIADVDDSRVANTSEDTGSAQEA
DSDSNDGFEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAF
ALPILSRINVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLS
GLRRGAQIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERILEDTPAD
KQVALFSATMPNGIRRLSKQYMKDPREIQVKSETRTNTNITQRFLNVAHRNKLDALTRIL
EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILV
ATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSI
ERATNAELIEMDLPTVDEVNESRKEKFADSITESLEDSQVAIFRNLIKAYAEEHDTPLED
IAAALATQARAGSEFLMKEPPPEKRRERRDRFDRDDRRGDRRDRGDRRDRGDRGSRFERS
GDMAVYRLAVGKRQHVRPGAIVGALANEGGLSNKDFGRITIAVDHTLVELPKGLPQSVFD
NLRDTRISGQLINIEKDNGRPGRRDDYRGDDRRGGYRRDRRDDRRGDRRDRGDRRDRYRG
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaccgatgacgccaccggcggcgctaacgagccggatgagaagattttgtcg
gaatctcaggacaattcgcaggtagacgaaggcagcatcacacttgatgatgttattgct
gatgtagacgactccagggttgcgaacacttctgaggacaccggctccgcgcaagaagcg
gacagtgacagtaatgatggctttgaggctttgggcctcccagacgcaatccttaaggca
gtcgccaaggttggctttgaaacgccgtctcctattcaggcacagaccatcccagtcctc
atggaggggcatgatgtgatgggtctggctcagaccggtacgggtaagaccgctgcgttt
gccctcccgattctttcccgtatcaatgtgaagaagcgccacccacaggcgctgatcctt
gctcctactcgcgagcttgctcttcaggttgcggactctttccagtcttttgcagaccac
ctcggagacattcatgttctgccgatctatggtgggcaggcatatggtatccaattgtcg
ggtcttcgccgtggcgcgcagatcatcgtgggtaccccaggtcgtgttattgaccacctg
gaaaagggctcactcgatatctctaacctgaactatctcgttcttgacgaggcagatgag
atgctcagcatgggcttccaggaagatatcgagcgtattcttgaggatactcccgcggac
aagcaggttgctttattttctgcgacgatgcccaacggcattcgccgtctgagcaagcag
tacatgaaggatcctcgtgagattcaggtgaaatccgagactcggaccaacaccaatatc
acgcagcggttccttaatgttgctcaccgtaacaagcttgatgccttgactcgaatcctt
gaggtcaccgagtttgaagcgatgattatgttcgtgcgcacaaagcatgaaactgaagag
gtcgcagagaagttgcgtgctcgtggtttttctgccgccgccatcaatggcgatatcgca
caggcacagcgtgagcgcaccgtggaccaactcaaagatggtcgtctagacattcttgtg
gccacagacgtggcagcgcgtggtctggatgtcgagcgcattactcacgtgttcaactac
gacattcctaatgacaccgaatcttatgttcaccgcattggtcgtaccggccgcgctgga
cgtagcggtgaggcaattctttttgttaccccacgtgaacgtcgtatgctgcgctccatt
gagcgtgctaccaatgcagagcttattgaaatggaccttcctacggtcgacgaggttaac
gagtcccgtaaggaaaagtttgcagattccatcacagaatcgctagaagactcccaggtt
gcgattttccggaacttgatcaaggcctacgcagaagagcatgacaccccacttgaggac
attgctgctgccttggctacccaggctcgtgctggtagtgagtttttgatgaaggagcca
ccaccagagaagcgtcgtgagcgtcgcgatcgctttgaccgggacgatcgtcgtggcgat
cgccgggaccgcggcgaccgccgtgatcgtggtgaccgcggttctcgttttgagcgctct
ggcgatatggcagtgtatcgccttgccgtgggtaagcgtcagcatgttcgtccgggcgct
attgttggcgcactggcaaacgaaggcggattgagcaataaggactttggtcgtatcaca
attgctgtggaccacacgttggtggagcttcctaagggactcccacaatctgtctttgat
aatctacgcgacactcgtatctcgggtcagctgattaacattgagaaggacaatggtcgt
ccggggcgtcgtgatgattaccgcggtgatgaccgtcgtggtggataccgtcgcgatcgt
cgtgatgatcgtcgtggcgaccgccgagaccgcggcgaccgccgtgatcgctatcgtggc
tag
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