Corynebacterium pseudotuberculosis Ft_2193/67: CPTC_01836
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Entry
CPTC_01836 CDS
T03484
Name
(GenBank) Zn-dependent hydrolase, RNA-metabolising, CPSF 100 kDa -like protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cpsf
Corynebacterium pseudotuberculosis Ft_2193/67
Pathway
cpsf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpsf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPTC_01836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpsf03019
]
CPTC_01836
Messenger RNA biogenesis [BR:
cpsf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CPTC_01836
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AIG12124
LinkDB
All DBs
Position
complement(1917666..1919717)
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AA seq
683 aa
AA seq
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MTEPRNRSRKVTRKAGPPEATETPVFQAPDASAEAPAKAEAEKKTSEESSSNQDAPSKGN
RGRSNSGRSGNGTRNGRSRRGGNSQNNKGNRGRRNVVKSMQGADLTERLPEPPKAPKNGL
RIYALGGISEIGRNMTVFEYNGKMLLVDCGVLFPSSGEPGVDLILPDFGPIEDKLDKVEA
LVVTHGHEDHIGAIPWLLKLRPDLPIYASKFTLALIAAKCREHRQRPKLIEVNEKSDINR
GPFNIRFWAVNHSIPDCLGLAIKTGAGLVIHTGDIKLDQTPTDGRPTDLPALSRFGDEGV
ALMLCDSTNATTPGVSGSEADIAPTLKRLVGDAKQRVILASFASNVYRVQAAVDAAVASG
RKVAFNGRSMIRNMEIAEKMGYLKAPRGTIVSMDDAAKMAPHKVMLITTGTQGEPMAALS
RMARREHRQITVRDGDLIILSSSLVPGNEEAVFGVINMLAQIGATVVTSREAKVHTSGHG
YSGELLFLYNAARPVNAMPVHGEWRHLRANKELAISTGVERDRVVLAQNGVVVDLVDGRA
RVVGQIQIGNLYVDGVTMGDIDAGVLEERTSLGEGGLIAITAVIDNRTGRLLERPTVQAK
GFSEDAVAMMPEVAELVENTMTDLAGEGENDPYRMVQQLRRRVSRFVEQKWRRKPMIMPT
VIPTTQTQVEADDEEIRATRESL
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaccacgtaaccgttcccgaaaggttactcgtaaagctggcccgccggaggct
actgaaacaccagtgtttcaagcccccgatgcatccgcggaagcaccagctaaagctgaa
gcagagaagaaaacttcagaggaaagctcttctaaccaggatgctccttctaaaggtaat
cgtggacgctccaactctggacgatccggcaacgggacgcgcaatggtcgctcacgccgt
ggcggcaattctcagaacaataaaggcaaccggggtaggcgcaacgtggtcaaatccatg
caaggcgccgatctgactgaacgccttccagagcctcccaaagctccaaagaatggtctg
cgtatctacgctctcggcggtatctctgaaattggtcgtaatatgaccgtttttgagtac
aacggcaaaatgttgttagtcgattgtggtgtgcttttcccctcctccggtgaaccaggc
gtggatttgatcctgcctgattttggtcctatcgaggataagctagacaaagtcgaagcg
cttgttgttacgcatggacatgaagaccacattggagctatcccgtggctgctcaagttg
cgtccagacctgcccatctacgcttccaaatttacgttggctcttattgctgcaaaatgc
cgggagcaccgtcagcgccctaagctgatcgaggtaaacgaaaagtccgacattaaccgt
gggccttttaacattcgtttctgggcagtcaatcactcgattccggattgcttgggtctt
gcgattaaaaccggtgcaggcttggtgattcataccggtgacatcaagcttgatcaaact
ccaacagacggtcgtcctaccgaccttcccgcgctgtctcgcttcggtgatgagggcgtt
gccctcatgctctgcgattccactaatgcaactactccgggtgtctctggctctgaagcc
gatatcgcgccgaccctgaaacgcctcgttggcgatgcgaaacagcgcgtcattttagcg
tcgtttgcctccaacgtatatcgcgttcaggctgcggtagatgctgctgtggcttcgggg
cgcaaagtcgcgttcaacgggcgctccatgatccgtaacatggaaattgcggagaaaatg
ggttacctaaaggcgcctcgcggaactattgtcagcatggatgatgctgcaaagatggcg
ccgcataaggttatgctcattaccacgggtacacaaggtgagccgatggcggcactgtcg
cgtatggctcgccgtgagcaccgacagatcacggttcgagatggagatctgatcatcctt
tcttcttccttagtgcctggtaacgaggaagccgtgtttggcgtcattaatatgctggct
cagattggtgcaaccgttgtgacaagccgagaagctaaggttcacacttctggtcacggt
tattccggtgagctgttgttcctttacaacgctgctcgtccggtgaacgctatgccggta
cacggcgagtggcgtcatctgcgcgccaataaggaactggcaatttccactggtgtggaa
cgcgaccgtgtggttctcgcacaaaatggtgttgttgtagacctcgttgatggacgtgca
cgggtggtcgggcaaatccagattggcaatctctacgtggatggcgtcactatgggcgat
atcgacgctggggttctggaggagcgaacctccttgggtgagggcggcctgatcgccatc
acagcggtgatcgataatcggactggaaggctgcttgagcgcccgactgttcaggcgaag
ggtttctccgaagatgctgtagccatgatgcctgaggttgcggaactagtagaaaacact
atgactgacttggccggggaaggcgaaaatgatccttaccgcatggttcagcagttgcgt
cgtcgtgtgtcccgctttgtggaacagaagtggcgtcgtaagccaatgattatgcctacc
gttatcccaaccacacagacccaggtggaagcggatgatgaggagatccgagcaactcgc
gagagcctataa
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