Chlamydia psittaci GR9: B598_0933
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Entry
B598_0933 CDS
T02309
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cpsg
Chlamydia psittaci GR9
Pathway
cpsg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpsg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B598_0933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpsg03400
]
B598_0933
Enzymes [BR:
cpsg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B598_0933
DNA repair and recombination proteins [BR:
cpsg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B598_0933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
DUF3638
ERCC3_RAD25_C
AAA_30
RecG_dom3_C
ADDB_N
AAA_19
PhoH
Motif
Other DBs
NCBI-ProteinID:
AFS21003
LinkDB
All DBs
Position
979031..982066
Genome browser
AA seq
1011 aa
AA seq
DB search
MEFPSSEIDLSPKLVNIDAVGKRDKVLYDLYQKKAPIFCVTTLKALLEKTRSPKDTAHQH
LDIQVGDVLDPDIMIDLCKNLGYRHETLASDKGEFAYRGGIIDIFPLSSPEPFRIEFWGE
KIISIRPFNPSDQLSTGKVSKLSISPATKDSGTEVLSHCLLDYFDTPPAFLFDNLTLLED
DFSEISGTLSSLPNRFLPIQDLCRRAFQSQTIFFEEKNFPNVRTIKNTQVNIEVFHCDIQ
ASRLVAPFIYPNEVIDEQENPLLGFLQKLQEYIPNKGQPFNVALYNTKAKSLKEARALIE
TLSQSSIHIYEKPGNLSSSFALVNERFAAISLAEFASTKVLRRQKQRNYFSVTTEEVFVP
IPGETVVHLHNGIGKFIGMEKKPNHLNIETDYLVLEYADKARLYVPSDQAYLISRYVGVS
DKTPDLHNLNGSKWKRSRDLSEKSLILYAEKLLQLEAQRSTTPSFIYPPHGEEVIKFEES
FPYEETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAVKAVCDGQRQVIVM
VPTTILANQHYETFTQRMAGLPINIAVLSRFSEGKALKKIFEDTAQGNIDILIGTHKLIN
KNLEFKNPGLLIIDEEQRFGVKVKDFLKERYPTIDCLTVSATPIPRTLYMSLSGARDLSL
ITMPPLDRLPVSTFVLEHNEETLSAALRHELLRGGQAYVIHNRIESIFRLGNTIRNLVPE
ARIAVAHGQMSSDELASIFQKFKDQETNVLVATALIENGIDIPNANTILVDQADKFGMAD
LYQMKGRVGRWNRKAYCYFLVSHLDRLSGPAAKRLQALNKQEYGGGMKIALHDLEIRGAG
NILGTDQSGHISAIGFNLYCKLLKKTVAALKNNSSPLLFNDDVKIEFPYKSRIPDTYIDL
ASLRIEFYQKIGGAEDAEQLDLIKEEMRDRFGPLPEEVLWLFALAHVRLFALQHNISSIK
GTGNALYIQQCHGKTEQIKKTLPYSLSPTPELLVAEVLESIEKAFPLKTPR
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
gtggagtttccttcatcagaaatagacttatctccaaagcttgttaatatcgatgctgtt
gggaaacgtgataaggttctttacgatttgtatcagaaaaaagcccctatattttgtgta
acaacactaaaagctttactagagaaaactcgatcaccaaaagatacagctcaccaacat
ttagatatccaagttggagatgttcttgatcctgatatcatgatcgatctatgtaaaaat
ttaggttatcgccatgaaactcttgccagcgataagggagagtttgcttatagaggaggg
attattgatatctttcctctatcttctccagaacctttccggatagagttttggggagaa
aagatcatctcaatacgtccttttaatccatctgatcaactctcaacagggaaagtttcc
aagctgtctatatccccagccacaaaagattcggggacagaagttttatcacactgccta
ttggattattttgatacacccccagcatttctcttcgataatttaaccttgttagaagat
gatttctcggagatttcagggacgttgtcttcgctacctaaccgttttctacctatccaa
gatttatgtcgacgtgcttttcaatctcagacgattttctttgaagagaaaaacttccct
aatgttcgtacaattaaaaatacccaagtaaacattgaagtcttccactgcgacattcaa
gcttcccgacttgttgctccttttatctatcctaacgaagttatcgacgaacaagaaaat
ccccttcttggttttctacaaaagcttcaagaatatatccctaacaaaggacaaccgttt
aacgtagccctctacaatacaaaagcaaaatctttaaaagaagctcgggctctaatagaa
acgctaagccagagctctatacatatctatgaaaaacctgggaatctctcttctagcttt
gctcttgtaaacgaaagatttgctgctatttccctagcggaatttgcttctacaaaagta
ttgcgaaggcaaaaacagagaaattatttttccgtaactactgaagaagtattcgttcct
attcctggagagacagttgttcatttacacaatggtattggcaaatttatcggaatggaa
aagaagccaaaccatttaaatattgaaactgactatctagttcttgaatatgccgacaaa
gcacggctgtatgtgccttcagaccaagcctatctgatttcacgttacgtaggagtttct
gacaaaactcctgaccttcataatctaaatggctctaaatggaaacgatctcgagatctc
tctgaaaagtctcttatattatatgctgagaaactccttcagctcgaagcacagcgttcc
acgactccttcatttatttatcctccccatggagaagaggtaattaaattcgaagagagc
tttccttatgaagaaactccagatcaattaaaagcgattgagcaaatctattccgatatg
atgtccgataagctcatggaccgtttaatttgcggtgatgcaggattcggaaagacggaa
gtcattatgcgagctgctgtgaaagcggtttgtgatggtcagcgacaggttattgttatg
gtccccacaaccattctagcaaatcagcattacgaaactttcacccaacgtatggcaggg
ttaccgataaatattgctgttctttcgcgcttttctgaagggaaggctctgaaaaaaatc
tttgaggatacagctcaaggcaatattgatattttaatcggcacacacaagttaataaat
aaaaacttagaattcaaaaatcctggtttattgattattgatgaggaacaacgttttggt
gttaaagttaaagatttcctcaaggaacgttaccctacgatagactgtctcacagtatca
gctacacctattccgagaacattatacatgtctttgtcgggagccagggacctctctttg
attaccatgcctccattagatagactgcctgtttctacttttgttttagaacacaatgaa
gaaactctatctgcagccttacggcacgaattattgcgaggtggtcaagcatacgtaatt
cataatcgtattgagagcatttttagattagggaatacaatacggaacttggtaccagaa
gcacgtattgctgttgctcatggccaaatgtcttcagatgagttagcttctatttttcaa
aaatttaaggatcaagaaaccaatgtccttgtagcaacagcacttatagaaaatggtatc
gatattcctaatgccaatacgattttagtcgaccaagcagataaatttggcatggctgat
ctgtatcagatgaaaggtcgtgtaggaagatggaatagaaaagcttactgttatttttta
gtttcccatttagatagattatctggtcctgctgcaaaacgtttacaagctttgaataaa
caagaatatggaggaggaatgaagatcgctctccatgatttagaaattcgtggcgcagga
aatattttaggaaccgatcaatccgggcatatcagtgcgattggattcaacctctactgt
aagttattgaaaaaaacggttgctgctttaaagaacaactcttctcctttattattcaac
gatgatgtaaaaatagagtttccttataaatcccgcatacctgatacctatatagatttg
gcgtctctgcgtatagaattttaccagaaaatcggtggtgctgaagatgccgaacagtta
gatttgataaaagaagagatgcgcgatcgcttcgggcctctacccgaagaggtcttatgg
ttatttgcattagctcacgtacgtctatttgctctacaacacaatatttctagcattaaa
ggtacggggaatgctttgtatattcaacaatgtcatggaaaaaccgagcaaataaagaaa
acattaccctattctttatctcccaccccagaactcctggtagctgaagtgttagaatct
atagagaaagcatttcctctaaaaacccctcgttaa
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