Corynebacterium pseudokroppenstedtii: Q0N40_03085
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Entry
Q0N40_03085 CDS
T10643
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cpsk Corynebacterium pseudokroppenstedtii
Pathway
cpsk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpsk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Q0N40_03085 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpsk03400
]
Q0N40_03085 (mfd)
Enzymes [BR:
cpsk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Q0N40_03085 (mfd)
DNA repair and recombination proteins [BR:
cpsk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Q0N40_03085 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
DUF3638
IstB_IS21
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WPF25982
UniProt:
A0AAU0Q0B9
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All DBs
Position
715129..718926
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AA seq
1265 aa
AA seq
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MGWPPLAGVVQLALQSPKLQGVLASVGEPRLHISAIDEARSWVARAIAEKSVVVIVTATS
REAQDLTAELRDMMGDAVAMFPAWETLPHERLSPGSETVGARLKVLRRLAHPHDIPGEQP
IRVVVAPARSFIQPIMKGLGEREPIILAEDTDVTGIATRLAEMGYQHVDLVGKRGEFAVR
GGVVDIFPSTAELPVRAELWGDEISDLRAFSVGDQRTIENFDPGVVPVYPCRELLIDDAV
RASAEKMARTHASNATLADALTKISEGVAVEGMESLIPVLFDGPMVTLPEEAAAADPSAT
TTVLVMSPEKVQRRADDLIATGKEFVKAGWEAAAMGAESPIDTAALAEAEDGNDDLNVDQ
SAYRSLGAMEKTAEHHGLSWWTCAPPGFLGSAEASSTLELDFSTGPQPKGKPGDVEKAMA
ELHDHVAHGGRLVFTALTPASAQRMSGRFREAGIGVTPDADPQNPPAPGKATVIRAVLHG
GLVIPHVDDAQPADDAQPTDSDEATSSAASRPLLVVAETDFTGNRIAAYGDGRRRPRRKR
NRVDPLSLNPGDLVVHETHGIGRFVKMQERTVGKGADATHREYMVLEYAPSKRGGAADHL
YVPMDSLDLLSRYVGGENPSLSKMGGSDWKNTKKKARAAVRDIAADLVQLYAKRQAAPGY
AFSPDTPWQREMEDNFPFTETEDQYNAIEAVKEDMEKPVPMDRVIVGDVGYGKTEVAVRA
AFKAVQDGKQVVLLVPTTLLAQQHFATFSERMEGFPITIRQLSRFTTPKQAREVLTGLAE
GQVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVEHKEHIKALRSHVDMLTMSATPIPR
TLEMSMAGIRDMSTILTPPEDRHPVLTYVGVQEDKQIAAAIRRELLRDGQVFYVHNRVRS
IEQVAQHIRELVPEARVVVAHGQMNEDQLENTVEGFWDREYDVLVCTTIVETGLDISNAN
TLIVENAHHMGLAQLHQLRGRVGRSRERGYAYFLYPPSQTLTETSYDRLSTIAQNNDLGA
GMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVGEAVEAFKAMADGKPIDGSDKE
NKETRIDINVDAHIPTSYIASERLRLAAYRDLAQAKNEEALQNVRAELVDRYGQPPQEID
RLLAVARLRMVCRECGVTDVVATGANKAAISFSPIELPDSGRVRLGRLYPGAQYRATTHN
VVVPAPKKGRGIRAQAVKDEELLQWCADVMTSLLGKPRREVASGVQPDTTGGKSHQKNST
KSKVR
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atgggatggccacccttggccggggtggtgcagttggcgctgcaatcgccgaaactccaa
ggagtcctggcctcggtaggggagccgcggctgcacatctcagccatcgacgaggcacgg
tcgtgggtggccagggcgatcgccgaaaaatccgtcgtcgtcatcgtgaccgcgaccagc
cgcgaagcccaggatctcaccgcagaattgcgcgacatgatgggcgatgccgtcgccatg
ttccccgcctgggagacgctcccgcatgagcgtttgtctcccggttcggaaacagtgggt
gcgcggctcaaggtgcttcgccgcctcgcacacccccatgacatccccggtgagcagcca
attcgtgttgtcgtcgccccggcgcggtcgttcatccagcccatcatgaagggcttgggg
gagcgcgaaccgatcatcctcgcggaggacaccgatgtcacggggatcgccactcgttta
gccgagatgggctatcagcacgtggatctcgtcggcaagagaggggaattcgccgttcgc
ggtggtgtggtggatattttcccctccacggccgagctcccggtgcgcgccgaattatgg
ggtgatgagatctccgatttgcgcgccttttcggtgggtgaccagcgaacaattgagaat
tttgatcccggtgttgttcccgtttacccgtgtcgtgaacttcttattgacgacgctgtc
cgcgccagtgctgagaaaatggcacgcacacacgcgtcgaatgccacgctggcggacgcg
ttgacgaagatcagcgaaggtgtcgccgttgaggggatggagtctctcattcctgtgctt
tttgacggcccgatggtgacgcttcctgaggaagcggccgctgcggacccgtcagcgacg
acgacggtgctcgtgatgtcgccggagaaagtgcagcgccgggccgacgacttgattgcc
acaggtaaagagtttgtcaaagccgggtgggaggccgccgcgatgggggcggagtcgccg
atcgacaccgccgcactggcggaagccgaggacggcaatgatgatctgaacgttgaccag
agcgcgtatcgctcgctgggcgccatggagaagacagcggaacaccacggcttgtcctgg
tggacgtgcgctcccccggggttcttgggcagtgcggaggcatcgtccaccctcgaattg
gatttctccaccgggcctcagcccaaggggaaaccgggcgacgtggagaaagcgatggcg
gagcttcacgaccacgtggcgcacggtggccggctcgtgtttacggcactcacacccgcc
tctgcgcaacgtatgagcggtcgtttccgtgaagccgggatcggcgtgacgcccgacgcg
gatccccagaatccgcccgcgccgggtaaagcaacggtcattcgggcagtgctgcacgga
ggcttagttatcccgcatgtcgatgacgcccaaccagcggacgacgcccagccgacggac
agtgacgaggccacatcctcggctgcgtcccgccccttgcttgtcgtcgctgaaaccgat
ttcaccggcaaccgcatcgctgcttatggcgatgggcgtcgtcggccacggcggaagcgc
aaccgcgtcgacccgctctcgctcaacccgggcgatctcgtcgtccacgagactcatggc
atcggccgattcgtgaaaatgcaggagcgcaccgttggcaagggtgctgatgcgacccat
cgggaatacatggttctggaatatgccccgtcgaagcgaggcggtgcagccgaccacctc
tatgtccccatggacagtctggatttgctctcgcggtatgtcggcggtgaaaacccgtcg
ctatcgaaaatgggcggatccgattggaagaacaccaagaagaaagcccgcgccgcagtt
cgcgatatagccgccgacctcgtgcaactctatgccaagcgtcaggccgcgccggggtac
gcgttctcgccggacaccccgtggcagcgggagatggaggataacttcccgttcacggaa
acggaagaccagtacaacgccattgaagcggtcaaagaggatatggagaagcccgtcccc
atggaccgcgtgatcgtcggcgacgtgggatacggcaaaaccgaggtcgccgtccgtgcc
gcattcaaggcggtgcaggatggcaaacaagtggtcctccttgtccccacgacgttgctg
gcgcagcagcatttcgcgacgttcagcgagcggatggaaggtttccccattacgatccgc
cagctgtcccgcttcaccacgccgaagcaggcccgcgaagtcctgaccgggctggctgag
gggcaggtcgacatcgtaattggtactcaccgtctgctgcagactggggtgcagtggaag
aacttggggctcgttattgtcgacgaggagcagcgtttcggtgtggagcacaaggagcac
atcaaggcgctgcggtcccacgttgacatgttgacgatgtccgcgacgcctattccccgc
acgctggagatgtcgatggcgggaattcgcgatatgtcgacgatcctcacccctccggaa
gatcgccaccccgtgttgacctatgtgggtgtgcaagaggataagcaaatcgcggcggct
attcgtcgggaattgttgcgcgatggccaggtgttttatgtgcacaaccgtgtgcgttcg
attgagcaggtcgcgcagcatattcgtgagcttgttccggaagcgcgcgtggtcgtagcg
cacggccagatgaatgaggatcagctggagaacaccgtcgaagggttctgggaccgcgag
tacgacgtgttggtctgcacgacgatcgtcgaaacaggattggatatttcgaatgccaac
acgctgatcgtcgagaatgctcaccacatgggcttggcccagttgcaccagcttcgtggc
cgcgtcggccggtcgcgcgaacgcggatacgcctatttcttgtaccctccgtcgcaaaca
ttgaccgaaacgtcctacgaccgtttatcgacgattgcgcagaacaatgatcttggcgcc
gggatggccgtcgccatgaaagatcttgaaatgcgcggtgccggcaatgttttgggcgct
gagcagtcgggtcacatcgctggtgtcggctttgacctctatgtccgccttgttggtgaa
gccgtcgaggcattcaaggcgatggccgacggcaagccgatcgatggaagcgataaggaa
aacaaggaaacgcgcattgatatcaacgtcgatgcacatattcccacgagttatatcgcc
tctgaacggctacgtttggccgcgtaccgggaccttgcccaagcgaagaatgaagaggcg
ttgcagaatgtccgcgcggaattagtggacaggtacggccagccgccacaggaaattgac
cggctgctcgccgtcgcccggttacgcatggtctgccgcgaatgtggcgtgaccgatgtt
gtggcaactggcgcgaacaaggccgctatttcgttttcgccgattgaactgcccgattca
gggcgagtgcgtttgggccggctgtaccccggcgcgcaataccgtgccacaacccataat
gttgtggtcccagctcccaagaaagggcggggcattcgggcacaagccgtcaaagatgag
gaattgttgcagtggtgtgcggacgtgatgacgtcgctgctgggtaagccgcgccgggag
gttgcttctggtgtgcagccggacactactgggggcaagagtcaccaaaagaattccact
aaaagtaaggtccgttaa
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