Corynebacterium pseudokroppenstedtii: Q0N40_05945
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Entry
Q0N40_05945 CDS
T10643
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cpsk Corynebacterium pseudokroppenstedtii
Pathway
cpsk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpsk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q0N40_05945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpsk03019
]
Q0N40_05945
Messenger RNA biogenesis [BR:
cpsk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Q0N40_05945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
WPF24114
UniProt:
A0AAU0PW78
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All DBs
Position
complement(1389772..1391931)
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AA seq
719 aa
AA seq
DB search
MPDNRTRGRRSTRKAGSPDVDAAQRPEFTEPKATTHSQSSPSSDDNQGHADGNKANGRDG
NRNGSSGRSNRGGNNKHGGGNGNKGRNNRGSNNKNDNGRSERGGSRNSNKNGKNNRPNKR
GRDRNRGHNKNRSVVKSMQGADLTQRLPEPPKAPKDGLRIVALGGISEIGRNMTVFEYHN
RLLIIDCGVLFPSSDEPGVDLILPDFSYLEDKMDRVEALVVTHGHEDHIGAIPWLLKLRS
DIPIVASRFTCALIAAKCREHHQHPKLIEVNETSHEKYGPFDLRFWNVNHSIPDCLGIAL
KTGAGLLIHTGDIKLDQTPTGGRPTDLPALSRFGDEGVDIMLADSTNSTTPGFSGSEADV
APTLKRLVAEAKQRVIIASFASNVYRVQAAVDAAVAAGRKVAFNGRSMIRNMQIAEEMGY
LDVPRNTIVSMDDAAKMAPHKVLLVTTGTQGEPMAALSRMARREHRQITVRDGDLIVLSS
SLVPGNEEAVFGVINMLSQIGAHVVTSKDAKVHTSGHGFAGELLFLYNAARPKNFMPVHG
EWRHLRANKQLAISTGVREDHTVLAQNGVVVDLVDKHADVVGQIPVGNLYVDGVTMGDVN
AEVLEDRAQMGEGGVISVTVVIDNRTGMALEKPRVVASGFSDESREMMHEVEDLVDNTLL
DLSGEGENDPYRMAQQIKRRITKFVGEKWRRKPFVVPTVVPMTSDEPLVSDVTGTRESL
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
gtgccagataaccgcactcgcggtcggcgatcgacgcgtaaggccgggtcgcctgatgtt
gacgcagctcagcgtccagagttcacagagccgaaagccactacgcatagtcagtcctca
ccatcgtccgatgacaatcaaggccacgccgacggcaacaaagccaatggacgtgatgga
aatcgcaatggttcatcgggccgatcgaatcgtggtggcaataacaagcacggtggcggc
aatggtaataaaggccgcaacaaccgtggtagcaacaataaaaacgacaatggtcgttca
gagcgcggcggttcccggaactcgaataagaacgggaaaaacaatcgccccaataaacga
ggccgtgaccgcaacaggggacacaataagaaccgctctgtcgtgaaatccatgcaggga
gctgacctcactcagcgcttgcctgagccccccaaggcaccaaaagacggtctgcgcatc
gtcgctctgggtggtatttccgaaatcggccgtaatatgaccgttttcgaataccacaat
cggcttctcatcattgactgtggcgttcttttcccaagttccgacgaacccggcgtcgat
ctgattcttcctgatttttcctatctggaagacaagatggatcgtgtcgaggcgctggtc
gttactcacggccacgaggaccacattggtgcgatcccgtggttgctgaaactgcggtct
gatattcccatcgtggcctcgcgctttacgtgtgctttgattgcggcgaaatgccgtgag
caccatcagcacccgaagctgatcgaagttaatgagacgtctcatgagaagtatggtccc
tttgatctacgcttctggaatgtgaaccactccattccggattgcctcggtattgcgctg
aagactggggccgggcttctgattcatacgggcgatatcaagctcgatcagaccccgact
ggtggccgtcccaccgatttgccggcattgtcccggttcggtgatgagggcgtggacatc
atgctggcggattcgacgaactcgactacgcctggtttctcagggtcggaggccgatgtg
gccccgacgctgaaacgtctcgttgccgaagcgaagcagcgcgtcattatcgcttccttc
gcctcgaacgtgtaccgtgtccaagctgcagtcgatgcagccgtcgcggcgggcaggaag
gttgcgttcaatggccggtcgatgatccgcaacatgcaaattgcggaagagatgggctac
ttggacgttccacgaaacaccattgtttctatggacgacgccgcgaagatggctccgcac
aaggttctgctcgtcacgacgggtacgcagggcgagcccatggccgcgctgtcccgtatg
gcacggcgtgaacaccgacagatcactgtccgcgatggtgacctcattgttctgtcgtcg
tcactggtgccgggcaatgaagaggctgtgttcggtgtgatcaacatgctctcgcagatc
ggcgcccacgtggtgaccagtaaagacgctaaggtccacacctcgggtcacggtttcgcc
ggtgagctgttgttcctgtacaacgcagcccgcccgaagaactttatgcctgtgcatggt
gaatggcgtcacttgagggccaacaagcaactggccatatcgaccggtgttcgtgaggac
cacaccgtgctggcacaaaatggcgtggttgttgatctcgtggataaacacgccgacgtt
gttgggcagatccccgtcggaaacctctacgtcgacggtgtcaccatgggcgatgtgaac
gccgaggttctggaagaccgcgcccagatgggcgaaggcggcgtcatctctgtcaccgtc
gtgatcgataaccggacgggcatggcgttggagaagcctcgcgttgtggcatctggtttc
tcagatgagtcgcgcgagatgatgcatgaggtcgaggatctcgtcgataacaccttgctc
gatttgtcaggtgagggcgaaaacgatccttaccgaatggctcagcagatcaagcgtcgg
atcaccaagttcgtgggcgagaagtggcgcaggaagccatttgttgtcccgacggtcgtt
cccatgacatccgacgagccgctggtgtccgatgtgacaggtacacgcgaatcgctgtga
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