Corynebacterium pseudogenitalium: KBP54_00485
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Entry
KBP54_00485 CDS
T08714
Name
(GenBank) ATP-dependent RNA helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
cpsl
Corynebacterium pseudogenitalium
Brite
KEGG Orthology (KO) [BR:
cpsl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpsl03019
]
KBP54_00485
Enzymes [BR:
cpsl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KBP54_00485
Messenger RNA biogenesis [BR:
cpsl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KBP54_00485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
Flavi_DEAD
ParA
AAA_25
Helicase_RecD
AAA_11
AAA_19
ResIII
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
UUA87376
LinkDB
All DBs
Position
complement(108683..110875)
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AA seq
730 aa
AA seq
DB search
MPEHAFDLGKIGEGLPVAKVIGELPRTGPLVVEAPPGTGKTTLVPPAVANVCGKTLVTAP
RRVAVRSAAKRLADLDGSRLGQRVGYSIRGEHRDGSLVEFVTPGVLLNRLLQDPGLEGVN
AVIIDEVHERGLDTDLVLAMCMETALLRDDLYLCAMSATLDARRFADHMGAEVLSTEAAT
YPVEVTYAPHAGRMQGSREFYRHVAALAEAPERTLVFVPGVREVELVASFLDDATPLHGR
LSSAEQDAALYGDAAVVVSTNVAESSVTVPGVRRVVDAGLTRVPRRDARGMTGLVTVSAA
KSSADQRAGRAGRLGPGTVVRAYSETDYQHFQPDVAPEIATSDLTQAALQLAAWASPDLP
LLDPPPAHHLAAAQETLRLIGALDDEHRITALGEKLVRMPVDPRLGAALVKFGSGAADTV
AKLADQPAKRLARLVHQSAPVAPGDVIAAAYPQWVAKRDGGEYLLASGTRARLDVPIGAP
EWIAAAEVQRTARGAVIRAAEPLAMPQERVEEHVRASLVDGKVRARRVKAIGAIELSATP
IRPEPHEVEEALRDISFEDFALDSAATALKQRLDFLHATIGEPWPDVTKGDYSLEVAQLA
RGASIRELDMRQALMRQLPWPEASRLDELAPTRIAQGKLDYSTGRPVVRLKLQLAFGLAD
SPVIGGQRVLFHLLSPAGRELAVTDDLRSFWNGPYQDVRKEMRGRYPKHPWPEDPWTATP
TARTKRTLNK
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagcacgcgtttgacctgggcaagattggggaggggctgcccgtcgcgaaggtg
attggggagctgccgcgcaccgggccgctggtggtggaggcgccgcctgggacgggtaag
acgacgctggtgccaccggcggtggcaaatgtgtgtgggaagacgctggtgacggcgccg
cggcgtgtggcagtgcgttcggcggcgaagcggctggcggacctggatgggtcgcggctt
gggcagcgggtgggctactccattcgtggtgagcatcgggatggttcgctggtggagttt
gtgacgccgggtgtgctgctgaaccgcctgttgcaggaccctggcctggagggcgtcaac
gcggtgatcatcgacgaggtgcacgagcgtggcctggacaccgacctggtgctggccatg
tgcatggagactgccctgctgcgcgatgacctgtacctgtgcgccatgtcggcgacgctg
gacgcgcgccgcttcgccgaccacatgggcgccgaggtgctgtccacggaggcggcgacc
taccccgtcgaggtcacatatgctccgcacgctgggcggatgcagggttcgcgcgagttc
taccggcatgtggccgccctcgcggaggcgccggagcgcaccctggtgttcgtgccgggg
gtgcgggaggtggagctcgtcgccagctttcttgacgacgccactccgctccacggccgc
ttgtcctccgcggagcaggacgccgcgctctacggggatgctgcggtggtggtgtcgacg
aacgttgcggagtcctcggtgacggtgccgggtgtgcgccgcgtggtggatgccgggctt
acccgggtgccgcggcgggatgcccgcgggatgacgggcttggtgacggtctctgcggcg
aaaagcagtgcggaccagcgggcgggccgcgccggtcgcctggggcctggcacggtggtg
cgggcctactcggagacggactaccagcactttcaaccggatgtggcgccggagatcgcg
acgagtgacctcacgcaggcggcgctgcaattggcggcgtgggcgtcgccagacttgccg
ctgctggaccctcccccggcgcaccacttggccgctgcacaggagacgctgcggctcatc
ggcgcgctggacgatgagcaccgcatcaccgccctcggtgagaagctggtgcgcatgccg
gtggatccgcggctgggggccgcgttggtgaagttcggctcgggcgctgcggacacggtg
gccaaactcgccgaccagcccgcgaaacgcctggccagactcgtacaccagtcagcgccg
gtggcgcctggcgacgtgatcgcggcggcgtacccccagtgggtggccaagcgcgacggg
ggcgagtacctgcttgcctcaggaacgagggcgcggctggacgtgccgatcggcgccccg
gagtggatcgcggccgcagaggtgcagcgcactgcgcggggtgcggtgatccgcgcggcg
gaaccgcttgcgatgccgcaggagcgcgtcgaggagcacgtgcgcgcatcactggtggac
gggaaagtgcgcgcacgcagggtcaaagccatcggcgccatcgaactgagcgccaccccg
atccgccccgagccccacgaggtggaagaggcactgcgcgacatcagcttcgaagatttc
gcgcttgatagcgccgccaccgccctcaagcagcgcctcgatttcctgcacgccaccatc
ggcgagccgtggccggacgtgaccaagggcgactactcgctggaggtggcgcagttggcc
aggggggcgtcgataagagagctggacatgcgacaggcgctgatgcggcaactgccgtgg
cccgaggcttcgcggctcgacgagctggcgccgacgcgcatcgcgcaaggcaagctggac
tactcgacgggccgacccgtcgtgcggctgaagctgcagctggcgttcgggctggcggac
tcgccggtgattggcgggcagcgggtgctgttccacctactctcccctgctgggcgcgag
ctggcggtcacggacgacctgcgcagtttttggaacgggccctaccaggacgtgcgtaag
gagatgcgcgggcgctacccgaagcacccgtggccggaggacccgtggacggcgacgcct
actgctcgaacgaagcgcacgctgaataaatga
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