Corynebacterium pseudogenitalium: KBP54_04655
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Entry
KBP54_04655 CDS
T08714
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cpsl
Corynebacterium pseudogenitalium
Pathway
cpsl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpsl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KBP54_04655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpsl03019
]
KBP54_04655
03009 Ribosome biogenesis [BR:
cpsl03009
]
KBP54_04655
Enzymes [BR:
cpsl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KBP54_04655
Messenger RNA biogenesis [BR:
cpsl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KBP54_04655
Ribosome biogenesis [BR:
cpsl03009
]
Prokaryotic type
rRNA helicases
KBP54_04655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
UvrA_inter
DUF6892
adh_short
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UUA88135
LinkDB
All DBs
Position
961415..963550
Genome browser
AA seq
711 aa
AA seq
DB search
MITSENATGGEKEPDMNVSENQENPQDVAADAAREDTRDAGVSEETGAAQDAANAETNET
EQILSLADVVGGDVADLAGSEADEATEADETAEEPVNGFENLNLPEEVVDAVKKVGFEQP
SAIQAETIPLLMEGRDVVGLAQTGTGKTAAFALPILSRINRKERYPQALILAPTRELALQ
VSDSFQSFADHLGGISVLPIYGGQAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISN
LRFLVLDEADEMLNMGFQEDVERILEDTPEEKQVALFSATMPNAIRRISKQYLDNPTEVT
VKSKTRTNTNITQRYLFTAHRNKLDAITRILEVTEFEAMIVFVRTKQETEELAEKLRARG
FSAAAINGDIAQQQRERTVDQLRDGRLDILVATDVAARGLDVERISHVLNYDIPNDTESY
VHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNATIEEMDLPTVDEVNESRKTKFMD
SITESLEASEVQVFRSMVREYSAANNVPMDDIAAALATQALAGDEFLMKEPPKDRRDRRD
RDRWDRDDRRGRGRDRDDRRGGRSRFDHDSENFDTYRLDVGKRQHVRPGAIVGALANEGG
LSSKDFGRITIGGDFTLVELPKNLDSAVLDRLTDTRISGQLINIQRDHGAPPRGRGGRGR
GGYDRDDRRGGRGRGRGGYDRDDRRGGRGRGRGGYDRDDRRGGRGHDRNWD
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgatcacttccgaaaacgccaccggcggcgagaaagagccggatatgaatgtgtcggaa
aatcaggaaaacccgcaggatgtcgcagcggatgctgcacgtgaggacaccagggatgcg
ggagtttctgaggaaaccggcgctgcgcaagacgcagccaatgccgaaactaatgagact
gagcagattttgagccttgccgacgtcgtcggtggcgacgtggcggacctcgctgggagc
gaggcggacgaggccacagaggcagacgagaccgctgaagagccagtgaacgggttcgag
aacctgaatctgcctgaagaagtcgtggatgccgtgaagaaggttggctttgagcagcca
tccgcgattcaggctgaaaccattccactgttgatggaaggccgcgacgttgtcggcctt
gcgcaaacgggtaccggtaagacggccgcgttcgcgctgccgatcctttcgcggatcaac
cgcaaggagcgctacccgcaggcactgatcctcgcgcctacacgtgagcttgcgctgcag
gtatcagactccttccagtcgtttgcagaccaccttggcgggatctccgtgcttccgatt
tacggtggccaggcatacggtatccagttgtccggtctgcgccgcggtgcccagatcatc
gtgggtactccgggccgcgtcatcgatcacttggagaagggttcgttggacatttccaac
ctgcgcttccttgtcctcgatgaggcagacgagatgctgaacatgggcttccaggaagac
gtggaacgcatcttggaggacacaccggaagagaagcaggttgcgctgttctctgcgacg
atgccgaacgctattcgccgtatctcgaagcagtacctcgacaacccgactgaagtcacg
gtgaagtcgaagacgcgcaccaatacgaacatcacccagcgttacctgttcacggcgcac
cgcaacaagctcgatgcgatcacccgaatccttgaagtcactgagtttgaggcaatgatt
gtcttcgtgcgtacgaagcaggagactgaggagctggctgagaagttgcgtgcccgcggg
ttctccgcagctgcgatcaacggcgacatcgctcagcagcagcgtgagcgtaccgttgat
cagcttcgcgacggccgccttgacatcctggtcgctaccgatgtcgctgctcgtggcctg
gacgttgagcgcatcagccacgtgctgaactacgacatcccgaatgacaccgagtcatac
gtgcaccgcattggtcgcaccgggcgtgcaggccgtacaggtgaggcgatcctctttgtc
actccgcgtgagcgtcgcatgctgcgctccattgagcgcgtaaccaacgcgaccatcgaa
gagatggatctgccgacggtcgacgaggtcaacgagagccgcaagacgaagtttatggac
tccatcaccgagtcgctcgaggcgagcgaggtgcaggtgtttaggtccatggtccgcgaa
tactccgctgccaacaacgtgccgatggacgacatcgccgccgctttggcaacgcaggct
ttggcgggtgacgagttcctgatgaaggagccgccgaaggaccgccgcgatcggcgggac
cgtgatcggtgggatcgcgacgaccgccgtggccgcgggcgtgaccgtgatgaccgtcgt
ggaggccgcagccgcttcgaccacgattcggagaacttcgacacctaccgcctggatgtt
ggcaagcgccagcatgttcgcccgggtgcaatcgttggtgcgctcgccaacgaggggggc
ttgagctccaaggactttggtcgcatcactatcggtggggacttcaccctggttgagctg
ccgaagaacctggacagcgcggtccttgatcgtttgacggatacccgtatttccggtcag
ctgatcaatattcagcgtgatcacggtgcacctccgcgcggacgcggcgggcgcgggcgc
ggtggatacgaccgcgatgatcgccgcggtggccgcgggcgcgggcgtggcggttacgac
cgcgatgatcgccgcggtggccgcgggcggggacgtggcggttacgaccgcgacgatcgc
cgcggtggccgcgggcatgaccgcaactgggactaa
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