Corynebacterium pseudopelargi: CPPEL_07035
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Entry
CPPEL_07035 CDS
T07012
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cpso
Corynebacterium pseudopelargi
Pathway
cpso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPPEL_07035 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpso03019
]
CPPEL_07035 (deaD)
03009 Ribosome biogenesis [BR:
cpso03009
]
CPPEL_07035 (deaD)
Enzymes [BR:
cpso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CPPEL_07035 (deaD)
Messenger RNA biogenesis [BR:
cpso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CPPEL_07035 (deaD)
Ribosome biogenesis [BR:
cpso03009
]
Prokaryotic type
rRNA helicases
CPPEL_07035 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
UvrA_inter
adh_short
HEM4
Motif
Other DBs
NCBI-ProteinID:
AZA09517
UniProt:
A0A3G6IV74
LinkDB
All DBs
Position
complement(1486759..1488771)
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AA seq
670 aa
AA seq
DB search
MSITDNATGGENVPEENFVSESQDQSQGNAIQDVDGDKGANTSENNDSAAADNEKAAGAE
REQEGKKEAGFENLGLPKAVLKAVQKVGFEVPSAIQAQTIPLLMEGNDVMGLAQTGTGKT
AAFALPILSRIDAKKRHPQALVLAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGI
QLSGLRRGAQIIVGTPGRVIDHLEKGSLDISELKYLVLDEADEMLNMGFQEDVERILADT
PEDKQVALFSATMPNGIRRLSKQYMHDPREIQVKSETRTNTNITQRYLSVAHRNKLDALT
RILEVTEFEAMIMFVRTKHETEELAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLD
ILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRML
RSIERATNAPLTEMDLPTVDEVNDSRKSKFADSITESLEDAQVAVFRGLIKQYAEEHDVP
LEDIAAALATQARAGDEFLMKEAPPERRRDRRERDFDRGDRRERRGRDFDRGDRRDRGDR
GSRFERSQDMQLYRLAVGKRQHVRPGSIVGALANEGGLSNKDFGRISIFADHTLVELPKD
MSRDVLDNLRDTRISGQLINIERDNGRPPREHRGGFRGDRDDRRGGGRGGYRGNRGDRDD
RRGGRGRWRD
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaccgataacgccaccggcggcgagaacgtgccggaagagaattttgtgtcg
gaatctcaggatcaatcgcaaggaaacgccatccaagatgttgatggcgacaagggcgcg
aatacttctgagaacaacgactccgctgcagcggacaatgagaaagccgctggagcggaa
cgtgaacaagagggtaagaaggaagccgggtttgaaaacctgggcttgccaaaggccgta
ttaaaggccgtgcaaaaggttggctttgaggttccctcagccatccaggcacagaccatc
ccgttgctgatggaaggcaacgatgtgatgggtcttgcgcaaaccggtacaggtaaaact
gccgcgtttgccctgccgattctttcgcgcatcgacgcgaaaaagcgccacccccaggcg
ctggtgctggcaccaacccgtgaattggcactccaggttgccgattccttccaaagcttt
gccgatcacctcggcgatatccacgtcctgcccatttatggtggccaggcctatggcatt
cagctttctgggcttcgccgcggtgcgcagatcatcgtgggtactcctggtcgtgtcatc
gaccacctggaaaagggctcgctggatatctccgagctgaagtacctcgtcttggacgag
gcagacgagatgctcaacatgggcttccaggaagacgtggagcgcatcctcgccgatact
cctgaagacaagcaggtggcgctgttttctgccaccatgcccaacggtattcgccgtttg
agcaagcagtacatgcatgacccgcgtgaaatccaggtcaagagcgaaactcgcaccaac
accaacatcacgcagcgttacctttcggttgcgcaccgcaacaagctcgatgctttgacc
cgcatcctcgaagtaaccgagtttgaagccatgatcatgttcgtgcgcaccaagcacgaa
accgaggagcttgcagaaaagctccgtgcccgcggcttctctgctgccgccatcaatggc
gacattgcgcaggcccagcgtgagcgcaccgtggatcagctcaaagatggccgcctggac
atcctggtagccaccgacgttgctgctcgtggtttggacgttgaacgcatcacccatgtg
tttaactacgacatccccaacgacaccgaaagctatgtgcaccgcatcggccgtaccggt
cgtgctggtcgctccggtgaggcgatcctgtttgttaccccgcgcgaacgtcgcatgctg
cgctccattgagcgcgccaccaacgcgccgctgaccgagatggatctgccgaccgttgat
gaggtcaacgattcgcgtaagtcgaagttcgcagattccatcaccgagtcgctcgaagat
gcccaggttgcagtattccgcggcctgatcaagcaatacgccgaagaacacgacgttcct
ttggaagatattgctgccgcactggccacccaggcacgcgcaggcgatgagtttttgatg
aaggaagctccgccggagcgtcgtcgtgatcgccgcgagcgcgacttcgatcgtggggat
cgccgtgagcgccgtggccgcgactttgatcgtggagatcgccgcgaccgtggagatcgc
ggtagccgatttgagcgcagccaagacatgcagctctatcgccttgccgtgggcaagcgc
cagcatgtgcggcccggttccatcgttggcgccttggccaacgagggcggcttgagcaat
aaagacttcggccgcatcagcatctttgccgatcacaccttggtggagctgccaaaggat
atgtcccgcgatgtgctggataacctgcgcgatacccgcatctctggccagttgatcaat
atcgaacgcgataatggtcgccctccgcgtgagcaccgcggtggctttagaggcgatcgt
gatgatcgccgtggtggtggacgcggtggctaccgcggaaaccgtggagaccgcgatgat
cgccgtggcggtcgcggccgctggcgcgactaa
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