Corynebacterium pseudopelargi: CPPEL_09850
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Entry
CPPEL_09850 CDS
T07012
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cpso
Corynebacterium pseudopelargi
Pathway
cpso03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cpso00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CPPEL_09850 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpso03021
]
CPPEL_09850 (rpoB)
03400 DNA repair and recombination proteins [BR:
cpso03400
]
CPPEL_09850 (rpoB)
Enzymes [BR:
cpso01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CPPEL_09850 (rpoB)
Transcription machinery [BR:
cpso03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CPPEL_09850 (rpoB)
DNA repair and recombination proteins [BR:
cpso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CPPEL_09850 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AZA10073
UniProt:
A0A3G6IWY0
LinkDB
All DBs
Position
complement(2066109..2069585)
Genome browser
AA seq
1158 aa
AA seq
DB search
MAVSRQTKADIPGAPERYSFAKITEPIEVPGLLDIQLDSFAWLIGTPEWRAKKQEELGPD
ARVTSGLEDILEELSPIQDYSGNMSLSLSEPRFEDMKNTIDEAKDKDINYSAPLYVTAEF
INNDTQEIKSQTVFIGDFPMMTDKGTFIVNGTERVVVSQLVRSPGVYFDQTIDKSTERPL
HSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTTEQIKERFGFSEIMM
STLEADNVASTDEALLEIYRKQRPGEQPTRDLAQSLLDNSFFRAKRYDLAKVGRYKVNRK
LGLGGDNEGLMTLTEEDIATTIEYLVRLHAGETSMTSPEGIVIPVETDDIDHFGNRRLRT
VGELIQNQVRVGLSRMERVVRERMTTQDAESITPTSLINVRPVSAAIREFFGTSQLSQFM
DQNNSLSGLTHKRRLSALGPGGLSRERAGIEVRDVHPSHYGRMCPIETPEGPNIGLIGSL
ASYARVNAFGFIETPYRKVVDGVVTDQVDYLTADEEDRYVVAQANTPFDKDGKILEERVT
VRVKNGDIQVVSGDAIDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVR
SEAPLVGTGMELRAAYDAGDLLISKKSGAVENVSADFITIMDDEGIRDTYRLRKFERTNQ
GTSYNQKPLVSIGDRVEAGQVIADGPGTHNGEMALGRNLLVAFMPWEGHNYEDAIILNQR
LVEEDVLTSIHIEEHEIDARDTKLGAEEITRELPNVSEDVLKDLDERGIVRIGADVRDGD
ILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSMKVPHGETGKVIGVRRFSREDDDD
LAPGVNEMIRVYVAQKRKIQDGDKLAGRHGNKGVVGKILPAEDMPFMPDGTPVDIILNTH
GVPRRMNIGQVLEVHLGWLAAAGWEIDTDDPANAELMKMLPEELYSVPAGSLTSTPVFDG
ASNDELAGLLANSRPNRDGDVMVDADGKAQLFDGRSGEPFPYPVSVGYMYILKLHHLVDE
KIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWAMQAYGAAYTLQELLTIKSDDVVGR
VKVYEAIVKGENIPDPGIPESFKVLLKELQSLCLNVEVLSADGTPMELSGSDEDDFDQAG
ASLGINLSRDERSDADTA
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
ttggcagtctcccgccagaccaaggccgacatccctggggctcccgaacgttattcgttc
gcaaaaattaccgaacctatcgaggtcccgggacttctcgatattcagctcgattccttt
gcatggctgattggtacgcctgagtggcgcgccaagaagcaggaggagttgggccctgat
gcccgcgtaaccagcgggttggaggacatcctagaggagctttctcctattcaggattac
tccggcaatatgtctttgtcgctctcggagccacgcttcgaggacatgaaaaacaccatc
gacgaggctaaagataaagacatcaactactccgcgcctctctacgtcacggcggagttc
attaacaacgacacccaagagatcaagtctcagacggtgttcatcggcgatttcccgatg
atgaccgacaagggcacgttcatcgtcaacggcaccgagcgtgttgtggtgtcgcagctt
gttcgttcccctggtgtgtacttcgaccagaccatcgataagtccaccgagcgtcccctg
cactccgtgaaggtgattccttcccgcggtgcgtggctcgagttcgacgtggacaagcgc
gataccgttggcgttcgcatcgaccgcaagcgtcgccagcctgtcaccgtgctgttgaag
gctctgggttggaccaccgagcagatcaaggagcgcttcggcttctccgagatcatgatg
tctacccttgaggcagacaacgttgctagcaccgatgaagcgctgctggagatctaccgc
aagcagcgtccaggcgagcagccgacccgcgatctggctcaatcgctgctggataattcc
ttcttccgtgcaaagcgctatgacctagccaaggtgggccgctacaaggtcaaccgcaag
ctcggtcttggtggcgataacgagggtctgatgactcttacggaagaagacatcgctacc
accatcgaatacctggtgcgcctgcacgcaggtgaaaccagcatgacctcgcctgagggc
atcgtcatccccgtggaaaccgacgatatcgaccactttggtaaccgtcgtctgcgcacc
gtgggtgagttgatccaaaaccaggttcgcgttggtctttcccgcatggagcgcgtcgtg
cgtgagcgcatgaccacccaagacgcagaatcgatcacgcctacctcgctgatcaacgtg
cgtcccgtttcggctgcaatccgcgagttcttcggcacctcccagctctcgcagttcatg
gaccagaacaactccctgtctggtctgacccacaagcgtcgtttgtctgcgcttggcccc
ggcggcctgtctcgtgagcgcgccggcatcgaggtgcgcgacgtgcacccctcgcactac
ggccgtatgtgcccgattgagactcccgaaggcccgaacattggtctgatcggctcgctg
gcttcctatgcccgcgtcaacgccttcggcttcatcgagaccccttaccgcaaggtggtc
gacggtgttgtcaccgatcaggttgattacctcaccgctgatgaggaagaccgctatgtg
gtggcgcaggccaacactccttttgataaggacggcaagatcctcgaagagcgcgtcacc
gtgcgcgtgaagaacggcgatatccaggtcgtttccggcgacgccatcgactacatggac
gtttcgcctcgccagatggtctccgtggcaaccgccatgattcccttcctggagcacgac
gatgcaaaccgtgccctcatgggtgcgaacatgcagcgtcaggctgtgccgctggtgcgt
tccgaggctccgctggttggtaccggcatggagctgcgtgccgcctacgacgccggcgat
ctgctgattagcaagaagtccggtgctgttgagaacgtctctgcagacttcatcaccatc
atggacgatgagggcatccgcgatacctaccgtctgcgtaagttcgagcgcaccaaccag
ggcaccagctacaaccagaagccgctggtaagcatcggcgaccgtgtcgaggccggccag
gttattgccgatggccccggcacccacaacggtgagatggcgcttggccgcaacctgctc
gtggcattcatgccttgggaaggccacaactacgaggacgccatcatcttgaaccagcgc
ctggttgaagaagatgtgctcacctccatccacatcgaagagcacgagatcgatgcccgc
gacaccaagctcggtgccgaggaaatcacccgtgagctgccgaatgtttccgaagacgtg
ctcaaggacctcgatgagcgcggtatcgtgcgcatcggtgctgacgtgcgtgacggcgac
atcctggtgggtaaggtcaccccgaagggtgaaactgagctgacccctgaagagcgcctg
ctgcgcgccatcttcggcgagaaggcccgcgaggttcgcgatacctccatgaaggtgcct
cacggcgaaaccggcaaggtgatcggcgtgcgtcgcttctcccgcgaggacgacgacgat
ctcgcccccggcgtgaacgagatgatccgcgtctatgtggctcaaaagcgcaagatccag
gacggcgataagctcgctggccgccacggcaacaagggtgttgtgggcaagattctgcct
gccgaggatatgcccttcatgcccgatggcacccctgtcgacatcatcttgaacacccac
ggtgtgccgcgtcgtatgaacatcggccaggtgctggaagtgcaccttggttggctggct
gccgctggttgggaaatcgacaccgatgatcccgccaacgccgagctgatgaagatgctg
cccgaggagctctacagcgttcctgctggttcgctgacctccaccccggtattcgacggt
gcatccaatgatgagctggctggccttcttgccaactcgcgccccaaccgcgacggcgac
gtcatggttgatgccgacggtaaggcgcagcttttcgacggccgctccggcgagcctttc
ccgtacccggtttcggttggctacatgtacatcctcaagctccaccacctggtggacgag
aagatccacgcacgttccaccggcccgtactccatgattacccagcagccgctgggtggt
aaggctcagttcggtggccagcgcttcggcgagatggaggtgtgggcaatgcaggcatac
ggcgctgcctacaccctgcaggagctgctgaccatcaagtcggatgacgtggttggccgt
gtgaaggtctacgaggcgatcgtcaagggcgagaacatcccggatccgggtatccccgaa
tccttcaaggtgttgctcaaggagctgcagtcgctgtgcttgaacgtggaagtgctttcc
gcagacggcaccccgatggaactgtcgggctccgacgaggacgacttcgaccaggctggt
gcctcccttggcatcaacctgtctcgcgacgagcgttcggacgccgacaccgcataa
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