Corynebacterium pseudodiphtheriticum: L9H27_02690
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Entry
L9H27_02690 CDS
T08839
Name
(GenBank) translation initiation factor IF-2 N-terminal domain-containing protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cpsp
Corynebacterium pseudodiphtheriticum
Pathway
cpsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L9H27_02690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpsp03019
]
L9H27_02690
03009 Ribosome biogenesis [BR:
cpsp03009
]
L9H27_02690
Enzymes [BR:
cpsp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
L9H27_02690
Messenger RNA biogenesis [BR:
cpsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L9H27_02690
Ribosome biogenesis [BR:
cpsp03009
]
Prokaryotic type
rRNA processing factors
L9H27_02690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
UQV56669
LinkDB
All DBs
Position
595794..599399
Genome browser
AA seq
1201 aa
AA seq
DB search
MNFTKETIEKASTLTSAAWPEKTRVYTLAKNLGLSSRELIGVLADLQISKRAQSNVAPDE
VTAVLDYIASKGKADSGTAGRADSGKADSGTAGKAEQSEAEGKTADKSENTHGKKAQQPK
QPKQTDSTLDHEAEEKLRHRVRKNVENEINQIVQKVAADLPSISVSDEPEPAPNVPAPAE
PRMNAYVPVFRAPDVGPEVAESEIDDIIAATEEAEDATGAPEENDDNRGRNRAGKTSRGV
RRYGARIAASDATAHSSNSVASDDLVGADSAGDDDLTNDGLTGDDLTGDDSVRNDNSANN
RGGSSTNSRGRRRRGRRGGSRGRGSAQSVQAGDADQGDDNRHVAGSNVASQKDGGFDESA
QESSNEGSQGSVEEAAANKKDSGDAKNSGDAKNTGDAKNKDKAADNKHTVEKIDEPRGLR
GSDRLEAQRRRRNELREESRKTERIVSESEFQERRAAITRKMVVCERPRMDGPGTVTQLG
LLEDDVLVEHFVNAENQGSMIGNIYLGRVENVLRNMEAAFIDIGQGRNAVLYAGEVDWKA
RGLSGHQRRIEAALKPGDQVLVQVMKDPLGHKGARLTAHISFSGRYLVYVPGGRNAGISR
KLPAEERKRLKDMLERVVPEDGGTIIRTAAEGVPERAIAADVDRMHNQWLHIKQRVEDEM
QSASTEPVTLFEEPDMLVKVVRDLFNEDYTELIVDGDRAYEVIYSYVKSVAPDLLKRITK
HDPKAFNDQDSFTAYHIDEQIQVALSRNVPLPSGGSLVIDRTEAMIVIDVNTGKFTGKRK
GGNLEETVTRNNLEAVDEIVRQIRLRDLGGMIVIDFIDMILEENQDLVLRRLKERLTSDR
SRHQVSEVTSLGLVQLTRKRIGTGLLEAYAADCPTCSGRGVLINSDPVDAMKQAEIAAQA
HDHEPDNGYGRNRVLLAGSDASADGASASDDADAADDVDVTASTSADMHEDESPKSKRER
ERAAAAEFENLAASVIGKQQPKARTSDGSDEPTTGSAKSGRAKRGKNRRNKRAHDVVSQA
SAAAQDGAKTRNVTEKQNIGDTQPVGDKNAYEKAVAEFESSPRRRRRTRGNSRSDHRPRK
ADFRWDDTQGSNQTAPAKRILTNRKGHEETVAQATEIAGAKGAAEEAVRKSMKRRRVVRR
ISAVASQPGNDAPATVTQQQAGDASDSTHRTGGEKHQRSAKDAAVRKSTRRRRVVRRPVK
K
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
gtgaatttcaccaaagagacaattgaaaaagcttcgacgctgacaagcgcggcatggccg
gaaaagacccgcgtgtatacgttggcgaaaaatctagggttgagttcgcgggagctcatt
ggagttttagcggatttgcagatttctaagcgtgcccagtcgaatgtggcaccggacgag
gtcactgccgtactggattatatcgcgagcaaaggcaaagccgattcgggcacagctggc
agggctgattcaggcaaagccgactcaggcacagctggcaaggctgaacagagcgaagcc
gaaggcaaaacggccgataagagcgaaaatacgcatggcaagaaagcgcagcaaccaaag
caaccaaagcaaacagattcgacgctagaccacgaagcggaagagaaattgcgccaccgc
gtgcgcaaaaacgtggaaaatgaaattaaccagatcgtgcaaaaagttgctgcggatctg
ccaagcatttcggtatctgatgagcctgagccagccccgaatgtgcccgccccagcagaa
ccgaggatgaatgcctatgttccggtattccgtgcaccggatgtcggtccggaggttgcg
gaatctgagattgacgacatcatcgccgctacggaagaagccgaggatgcaaccggcgca
cccgaagaaaacgacgataaccggggacgtaaccgtgctggaaaaacctcgcgcggtgta
aggagatatggtgcgcggatcgcagcaagcgatgcgacggctcattcatccaattcagtc
gcttccgatgatctggtgggagctgactcagcgggcgacgatgatctaacgaacgatggc
ctaacgggtgatgacctaacgggtgatgactcggtgcgcaacgacaactccgcgaataat
cgcggtgggagcagcactaattcccgcggtcgacgccgccgtggtcgccgtggtggatca
cgtgggcgtggtagcgcgcaatcggtgcaggctggtgacgctgatcagggtgatgataat
cgccatgttgctggaagcaacgtcgcttcccagaaagacggcggttttgatgagagtgcc
caggagtcctcgaacgaaggttcacagggcagtgtggaagaagcagctgccaacaaaaaa
gactccggcgacgcaaaaaattctggtgacgcgaaaaacaccggcgatgccaaaaataaa
gacaaagctgcggacaacaagcacaccgtcgaaaagattgacgagccacggggtttgcgc
ggctccgaccgtctggaagcacagcgtcgtcgtcgcaacgagctgcgggaagaaagccgc
aagacagaacgcatagtttccgaaagcgaattccaagagcgtcgagcagcaatcacgcgc
aagatggttgtctgtgagcgtccacgcatggacgggccaggtacggttactcaactcggt
ctgctcgaagacgacgtgttggtcgagcactttgtcaatgcggaaaaccaaggctccatg
atcggaaatatctacctgggccgcgtcgaaaacgtgttacgcaacatggaagcagcgttc
atcgatattgggcagggacgcaatgcagtcctttatgccggggaagttgattggaaagca
cgcggcctcagcggacaccagcgtcgtattgaagcggccttgaagcctggcgaccaagtg
ttggtgcaggtcatgaaagaccccttgggtcataaaggtgcgcgtctgaccgcgcatatc
tcgttttctggccggtacctggtgtatgtgccaggcgggcgtaacgctgggatttcacgg
aaacttccggcggaagagcggaaacgtttgaaagacatgttggagcgcgtcgtaccggaa
gatggtggcacgatcatccgcacggctgcggaaggcgtgccggagcgtgccattgctgct
gacgtggaccgcatgcacaaccagtggctgcatattaagcagcgcgtggaagatgagatg
cagtctgcatcaaccgagccggtaactctatttgaagagccagatatgctggtcaaggtg
gttcgcgatctgtttaacgaggactacaccgagctcattgtcgacggcgatcgggcctac
gaggttatctactcctatgtgaagtccgtggctccggatttgttgaagcgaattacgaag
cacgacccaaaggctttcaacgaccaggattcctttactgcgtatcacattgatgaacag
atccaagtggctttgtcgcgtaatgtgccgttgccatccggtggttcgttggtcatcgac
cggacggaagcgatgatcgttatcgacgtaaataccgggaagttcactggtaagcgcaag
ggcggtaatctggaggagactgtcacgcgcaataacttggaagctgtagacgaaattgtg
cgccagattcgtttgcgagatttgggcggcatgattgtcattgacttcattgacatgatc
ttggaagaaaatcaggatctggtgttgcgtcggttgaaagagcgtttgacttcggatcgt
agccgtcatcaagtttcggaagtcaccagcttaggtttggtgcagcttacccggaagcgt
attggtaccggcttattggaagcttatgcggcagactgcccgacgtgttcgggtagagga
gtgctgatcaacagcgatcctgttgatgccatgaaacaggccgaaattgcggcacaggcg
cacgaccatgagccagacaatggctatggtcgcaatcgcgtattgttggcaggctctgac
gctagcgcggatggtgctagcgcaagtgatgatgcggacgcggctgatgatgtggacgtg
actgcgtcgacttcggcagacatgcatgaggatgagagcccgaagagcaaacgcgaacga
gagcgtgctgcagccgcagaatttgaaaatttggcggctagcgtgattggcaagcaacag
ccaaaggctcgaacttcagatggttcggatgagccaacaactggctcggcgaaatccggc
cgtgctaagcgtggcaagaatcgcagaaacaagcgtgctcatgatgttgtgtcgcaagct
tcggctgccgcacaagatggcgctaagacacgtaacgtcactgagaagcaaaacatcgga
gacacgcaacctgtaggtgataagaacgcctacgagaaagcggttgcggagtttgagtcc
agtccgcgccgccgccgtcgtactcgtggtaattctcgttctgatcatcgtccgcgcaag
gcggatttccggtgggatgacacccagggaagcaatcagacagcgccggccaagaggatc
ctcacgaaccggaagggtcacgaggaaacagttgcacaggctacagaaatagcaggggct
aaaggggctgctgaggaggcagtacgtaagtctatgaagcgtcgtcgagtagtgcggcgg
atttctgcggtggcttcccaaccaggcaatgacgcgccggcaacagtgacgcagcagcag
gctggcgacgcgagtgatagcacgcaccgcaccggtggcgagaaacatcaacgcagtgcc
aaagacgcggctgtgcgcaaaagcacacggcggcgtcgagttgttcgacgcccagtgaag
aaatag
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