Corynebacterium pseudodiphtheriticum: L9H27_04195
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Entry
L9H27_04195 CDS
T08839
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cpsp
Corynebacterium pseudodiphtheriticum
Pathway
cpsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L9H27_04195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpsp03019
]
L9H27_04195
03009 Ribosome biogenesis [BR:
cpsp03009
]
L9H27_04195
Enzymes [BR:
cpsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L9H27_04195
Messenger RNA biogenesis [BR:
cpsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L9H27_04195
Ribosome biogenesis [BR:
cpsp03009
]
Prokaryotic type
rRNA helicases
L9H27_04195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
UvrA_inter
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UQV56936
LinkDB
All DBs
Position
929812..931755
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AA seq
647 aa
AA seq
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MSITDNATGGDNEPDNFSQSPSTRSESQENSQGNTKDTAGAVAKSGETSEHTDAAAQATA
NDSPQGFSNLDLPTNVVEAVKAVGFEKPSPIQEQTIPILMQGRDVVGLAQTGTGKTAAFA
LPVLAQLDSTEKFPQALVLAPTRELALQVADSFESFAKHLGGIEVLPIYGGQAYGIQLAG
LRRGAQIIVGTPGRVIDHLEKGSLDISKLRYLVLDEADEMLNMGFQEDVERILADTPEEK
QVALFSATMPNGIRRLSKQYLNDPAEVTVKSQARTNENITQRYLFTQHRAKFDAFIRILE
VIDYDGMIVFTRTKHETEEVAEKLRAAGYSAAAINGDIAQNQRERTVEQLKSGRLDILVA
TDVAARGLDVERISHVINFDIPGDTESYVHRIGRTARAGRSGEAILFVTPRERRMLRSIE
KVTKATLEEMQLPTVDEVNEVRKKNFAQSITEALAAKDKDFFRTMIREYSKNNDVAMDDI
AAALAVKMQGDKEFLLKEQPVDKRKDRFNDKRGGRDFDDRGGRGGRDRGGRDRGGRNNRD
GNFQPYRLAVGKRQHVRPGAIVGALANEGGLSSKDFGRINIGAEHTIVELPRDLDPSVLD
RLSDTRISGELIKIRKDHGAPSRGGFRGGDGGGRQNKGGRKGGKFRN
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaccgataacgccaccggcggcgacaacgagccggataacttcagtcagtct
ccatcgactaggtcggaatctcaggaaaattcgcaaggcaacaccaaggacaccgcaggt
gccgttgctaagagtggcgaaacttctgagcacaccgacgctgcagcgcaagctacggcc
aacgatagtcctcagggtttttccaacctcgacctgcctaccaacgtggtagaagcggta
aaagccgtaggttttgaaaagccatctccaattcaagaacaaaccatcccgatccttatg
cagggtcgcgatgtggtgggcttggctcaaactggtacaggaaaaactgcagcttttgct
ctacctgttctggctcagctggactccaccgagaaattcccgcaagctttggtattggca
cctactcgcgagctagcactgcaagttgcagacagctttgagtcttttgccaaacacctc
ggtggtatcgaggtgttgccgatttatggtggacaagcctacgggattcagctagccggg
ttgcggcgtggtgcgcaaattatcgtcggcacgcctggccgtgtcatcgaccacctggaa
aaaggcagcctggatatttccaagctccggtaccttgtgcttgatgaagcagatgaaatg
ctcaacatgggattccaagaagatgttgagcgcattttggccgatactcctgaggaaaaa
caggttgcactattttccgccacaatgcccaatggtattcgccgcttatctaagcagtac
ctgaatgacccagcagaagtaactgttaagtcccaggcgcgtactaacgaaaacatcact
cagcgctacctctttacgcagcaccgcgctaagtttgatgcgttcatccgtatcttggaa
gtcatcgattatgacggcatgatcgtgtttactcgcacgaagcatgagacagaagaagtc
gcagaaaaactgcgtgccgcgggttatagcgcagcggcaatcaatggtgatattgcgcaa
aaccagcgcgaacgtaccgttgaacagctgaagtctggtcgtctagacattctggttgca
actgatgttgccgcacgaggcctagacgtagagcgtatttcgcacgttattaacttcgat
atccctggtgatacggagtcttatgtgcatcgtatcggccgtacagctcgagccggacgt
agtggtgaagcgatcttgtttgtaactccacgtgagcgtcgcatgctacgttccattgag
aaagttaccaaggcgacgctcgaagagatgcagttgccgacggttgatgaagtaaatgaa
gtgcgaaagaaaaactttgcgcagagcatcactgaggcgcttgcagcgaaggacaaagat
ttcttccgtaccatgattcgtgagtactcgaagaacaatgacgttgccatggacgatatc
gctgcagctctggctgtgaagatgcaaggcgacaaagaattcctgctgaaagaacagccg
gttgataagcgcaaagaccgtttcaatgataaacgcggtggccgtgactttgatgaccga
ggtggacgtggtggccgtgatcgtggcggtcgtgatcgcggtggccggaataaccgagat
ggtaacttccagccttaccgtttggcagtgggtaaacgccaacacgtacgtccaggtgcc
atcgtcggagcgttggcaaatgaaggcggtttgagcagcaaagatttcggccgtattaac
atcggagccgagcatacgattgttgagctgccacgcgatttggatccctcagtattggac
cgcttgtctgatacccggatctcgggtgaattgattaagatccggaaagatcatggagcg
ccatcgcgtggtggtttccgaggcggtgacggcggtggtcggcagaacaagggcggccgc
aaaggcggaaaattccgtaattag
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