Corynebacterium pseudodiphtheriticum: L9H27_04345
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Entry
L9H27_04345 CDS
T08839
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cpsp
Corynebacterium pseudodiphtheriticum
Pathway
cpsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L9H27_04345 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpsp03021
]
L9H27_04345 (rho)
03019 Messenger RNA biogenesis [BR:
cpsp03019
]
L9H27_04345 (rho)
Transcription machinery [BR:
cpsp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
L9H27_04345 (rho)
Messenger RNA biogenesis [BR:
cpsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
L9H27_04345 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
NACHT
S1CSD-TOTE-2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UQV56964
LinkDB
All DBs
Position
967962..970121
Genome browser
AA seq
719 aa
AA seq
DB search
MSTTDNPDLYSMKLPELRELAIAKGLKSITALRKGELIVAIETGKVPRKSTEKPLPRMKK
SELEAQRAARLAAQESGTGSVRNSPEKEAPASTEHTEQPISVKQDATVDGGDHARDSKEG
QQQPGLDKNTPGAAQEEETPSPAAARRARRARAKARANNNQHNQQHEHDRNRRNDNDSRR
GSLQATQVSEVDEAVQTQDQEQQPVVQRTSPAANTRRGRRGRRVRRLGENNHQQEAVQND
SQDHSSTDNNVGEVADRGGQSERQDRTDHDHRNRNARGGRDDRDNRGSREHRNRGNNRDN
NGLSNDHSGNHQGDNHDGGNDQGGNNDNRNNGLQEVAGILEVVDGNAAFLRTTGYRPSSL
DVFVNTNLVRRFHLRTGDYLTGKVKMTGGGQSHGKGRNRKKYNQMVFVETVNGLHPEEAK
QRPQFSKLTPLYPNKRLRLETEPKILTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQNI
ANAISTNNPECYLMVVLVDERPEEVTDMQRNVNGEVIASTFDRPPSEHTAVAELAIERAK
RLVEQGQDVVVLLDSITRLGRAYNNSSPASGRILSGGVDSNALYPPKRFLGAARNIENGG
SLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRGISERRVFPAVDVNPSGTRKDELL
LVPEEARIMTKLRRILSALDSHQAIDLLIKQLRKTKSNGEFLMQVASSAPMAAALEEED
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacaacggacaacccagacctgtattccatgaagcttcctgaattgcgggagctt
gccattgccaaagggttgaaaagcatcactgccctgcgtaagggggagctgatcgtagca
attgaaactggtaaggtgccacgtaaatccactgagaaaccgttgccgcgaatgaagaaa
tccgagttagaagcacagcgtgccgcgcgattggccgctcaggaatccggaacaggcagc
gtacggaattcgcctgaaaaggaagctcctgcctcaaccgagcacactgagcagcccata
tctgtaaagcaagatgccacagtggatggtggcgatcacgctagggacagcaaagaaggg
cagcaacaaccgggtctagacaagaacacccctggtgctgcacaagaggaagagacccct
tcgcctgcagcagctcgccgtgcgcgccgggcacgtgctaaagctcgcgctaacaacaac
cagcacaaccagcagcatgaacatgaccggaatcgccggaacgacaatgattcccgtcgc
ggatcgttgcaggctacacaggtatcggaggttgatgaagcggttcaaacgcaagaccag
gagcagcagcccgttgtgcaacgtactagcccggctgctaacacccgcagagggcgtcga
ggtcggcgtgttcgtcgtttaggtgaaaacaatcaccagcaggaagcggtacaaaatgat
tctcaggaccacagcagtactgacaacaatgttggtgaggtagcagatcggggtggccaa
tctgagcgccaagatcgtactgaccatgaccaccgcaaccgcaatgcacgtggtggccgc
gacgaccgcgacaaccggggttcacgggaacaccggaatcgtggtaacaaccgggacaat
aacgggttaagcaacgatcactctggaaatcatcagggggataaccacgatggtggcaat
gaccaaggcggtaacaatgacaaccgcaataacggtctgcaagaagtcgcgggcattctg
gaagtagtcgatggcaatgctgccttcttgcgtactacgggatatcgtccgagttcgctt
gatgttttcgtcaacaccaatttggttcgccgtttccatttgcgtactggcgattatctc
accggcaaggtgaaaatgaccggtggcggacagtcgcacggcaaaggccgtaatcggaaa
aagtataaccagatggtgttcgtggaaaccgtcaacggtttgcaccctgaagaagccaag
cagcgaccacaattcagtaagctcacgccgttgtacccgaataagcgtctgcgtctggaa
actgagccgaagattctaaccacccgcgtgattgacttgatcatgccgattggtaaaggc
cagcgagcgttgatcgtttcgccaccaaaggctggtaaaacgaccatcttgcagaacatc
gcgaacgcaatctccacgaacaatccggaatgctatctgatggtagtgcttgtcgacgaa
cgcccagaagaagttaccgatatgcaacgcaacgtcaatggtgaagtcattgcgtcaact
tttgatcgtccaccttcagagcacaccgcagttgccgaacttgctattgagcgtgctaag
cgcttagtagaacagggccaggacgtcgtcgtgttgttggattcgatcacccgtctgggc
cgtgcatacaataattcgtcaccagcgtctggtcgcatcctctcgggtggtgtcgactcg
aacgcactgtatccaccgaagcgattccttggtgcggcccgcaacattgaaaacggtggg
tcgttgacgatcattgcgaccgctatggtggagaccggttcgactggtgacaccgtgatc
tttgaagagttcaagggcactggaaacgcagagctgaagctggaccgtggaatctccgag
cgccgtgtcttcccggcagttgatgtcaacccatcgggcacgcggaaagacgagttgctg
ttggtgccagaagaagcgcgcattatgacgaagctgcgtaggattttgtccgcgctggat
tcgcaccaggctatagatttgttgattaaacagctgcggaagacgaagtcgaatggcgaa
ttcttgatgcaggttgcgtcgtcggctccgatggcagcggcgcttgaagaagaggactaa
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