Corynebacterium pseudodiphtheriticum: L9H27_06125
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Entry
L9H27_06125 CDS
T08839
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cpsp
Corynebacterium pseudodiphtheriticum
Brite
KEGG Orthology (KO) [BR:
cpsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpsp03019
]
L9H27_06125 (hrpA)
Enzymes [BR:
cpsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
L9H27_06125 (hrpA)
Messenger RNA biogenesis [BR:
cpsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
L9H27_06125 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
nSTAND3
AAA_22
HA2_N
NACHT
AAA_16
ResIII
TsaE
ABC_tran
RsgA_GTPase
PhoH
AAA_23
AAA_11
Motif
Other DBs
NCBI-ProteinID:
UQV55373
LinkDB
All DBs
Position
1354929..1358990
Genome browser
AA seq
1353 aa
AA seq
DB search
MNSSFTNSKCQNQTDTVPSKHELYQRLEQLRYADQQRFRRRLSKAKAAKALNAISDDLDK
AAAIIPAIEQHIPTIKFPGTLPVSQSVDEIAEAITENQVVVIAGETGSGKTTQIPKICLQ
LGRGRYGLIGHTQPRRLAARTVAERISDELNQKIGQSVGYAIRFDDRVGKNAAVKLMTDG
ILLAELQRDPYLYAYDTIIIDEAHERSLNIDFLLGYLKRLLPKRPDLKVIITSATIDPQS
FAKHFRDPKTHKPAPVIEVSGRTYPVEVRYQPLEIDVDGKTVAIDPLDGLCTAAEELLAE
GNGDILCFFPGEREIRDAQEALEQKRFRGVEIVPLFGRLSNQEQHRVFAPHSKRRIVLAT
NIAETSLTVPGIHYVIDTGTARISRYSTRTKVQRLPIEPISQASANQRAGRCGRIADGIA
IRLYSEEDFFSRPEFTDPEILRTNLASVILQMSALRLGAVADFPFVQSPEHKAVRDGLVL
LSELDAIDSTANSDSAPQLTKIGKQLARIPVDPRLARMLVEAERLECLQPVIVIVAAMTL
QDVRERPLEQQQQADQAHARFRSRSSDFLGLLSLWGYITEQRAELSGNQFRKRMKEEFLH
FMRIREWFDLVRQLQDIALDMKWTISNNKDKQHGGISITDGKFSGDSSAIHRALLTGLLS
NIGSRVSDSAEFQGARGTRFMIFPGSGVAKKPPELLMAAELVETSKLFARGVAAIEPSWV
ETAARPLLKHQYSDPSWSYKRGAAVATQRSTLYGVPIVADRTISYHRVDPEAARAMFIQH
ALIAGEWKTSHKFFHQNLEKLSTAGEYEEKARRRGIIVDEDTLFEFYDQRIPNSVTHSKA
FDGWWKKARRKQPNLLDFDPDKLLTDGATAVTEQDFPNHWRHGGLDLELTYLFEPGHRRD
GITVNIPVPMLANVDPEPFEWLVPGLREELVTELIRSLPKALRRSLVPAPDFAAQAIDHL
LPYETDLLQQVAEAFHKIGARGINASDFSPEKLPPHLHMTFAAIDKRGKIIDDDKDLSAL
QQRQAGKISASITKKMENKVRQSQNSSQADTRPRMHTTQRTYVSAWTKENLGTIPEQIEH
EVDNHLVTAYPALTINEQGLSVQYYPTRAAADTAMMTATLTLLLRSLSVNTQKMVNGLPL
QQRVAVEHYPHGGADGLVADARIAALRDLLIAEGGPVRSPDEFEKLKAAIGGKLPREVRQ
AVVTLAPGLVRYSALADELSNWEGPAIDDMRGQLDFLFPKQAISTHGIQQLRHLPRYLRA
IEIRLSDMTTAPDKDGERQDIIDDCHAYLENRLRRLPSGAERSSAVAKIRWMIEELRVSL
FAQRLGTAHPVSARRIHKAIDALGKNSPTKSQK
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atgaattcctctttcacaaactcaaaatgccaaaaccaaactgacactgttccaagcaag
cacgagctctaccagcgtcttgagcagttacgttacgcagaccagcaacgcttccgccgt
agattatcgaaagccaaagccgcgaaagccttaaacgctatttccgacgatctcgacaaa
gctgcggcaatcattccggctattgaacaacacattcccaccattaaatttcccggtact
ttgccggtgagccagagcgtcgacgaaattgccgaagcaatcactgaaaatcaagtcgtc
gtcattgctggtgagaccggttcgggaaaaactacgcaaatccccaaaatttgtttgcaa
ctcggacgtggccgctatgggttgattggacatactcagccacgtcggcttgcagcacga
accgttgctgagcgcattagtgatgaactgaaccaaaagattggacaatcggttggctac
gccattcgcttcgatgaccgcgtaggcaaaaatgcggcagtcaagctgatgactgacggc
attctgctggcagaattgcaacgggatccgtacctttacgcctacgacaccatcattatc
gacgaggcgcatgaacgcagtttaaatatcgattttctactagggtatctcaagcgttta
ctgcctaaacgacctgacctcaaagtcattattacctcggcgacaattgacccgcagagc
ttcgccaagcatttccgtgatccgaagacgcacaagcctgcgcctgtgattgaagtgtcc
ggccgtacttacccggtggaggttcgctatcaaccactcgagattgacgttgatggcaag
actgtagccatcgatcccctagatggtttgtgcactgcagcagaagagctactagccgaa
ggaaacggcgatattttgtgctttttccctggtgaacgtgaaattcgcgatgcccaagaa
gcactcgagcaaaagcgctttcgcggtgtcgaaattgtcccattgtttggtcgtttgtcg
aaccaagaacaacaccgagtgttcgcacctcattcgaaacgacggattgtcttggccacg
aacatcgctgaaacatcactgacagtgcccgggatccattatgtaatcgatactggaacg
gcacgcatttcccgatattcgacgcggacaaaagttcaacgcttaccgattgaacctatc
tcacaagccagcgccaaccagcgcgctggccgttgcggacgcatcgcagatggtatcgcg
attcgtttgtactctgaagaggatttcttttctcgcccagaatttactgacccggaaatt
ctgcggaccaacctagcaagcgtcattttgcaaatgtccgcgctccggctcggagcagtt
gcggattttccgtttgtgcaatcgccggaacataaagcagtccgcgatgggttagttctg
ctaagtgaactggacgcaattgattcgaccgcaaactccgattctgcaccacaactaacc
aaaatcggcaaacaactcgcacgaattccggttgacccgcgcttggcccgtatgttggta
gaagctgaacgcctagaatgtctgcaacccgtcatcgttatcgttgcggccatgacgctg
caagatgtccgtgaacgccctcttgaacagcagcaacaagcggaccaagcccatgcacgt
ttccgctctcgctccagtgattttttgggcttgttgtcattgtggggttatatcactgaa
caacgcgcggaattgtccggcaatcaatttcggaaacgcatgaaagaagaattcttacat
ttcatgcgaatccgggagtggttcgatttggtccgtcagctccaagacatcgccctggat
atgaagtggacgatctcaaacaacaaggataaacaacacggtggcatctcgatcaccgat
ggaaaattctccggcgactcatccgcgatacaccgcgcgctcctcacaggcttgctgtcg
aatatcggatcgcgcgtgagtgattctgcggaattccaaggtgcgcgcgggacccgtttt
atgattttcccggggtctggagtggcaaaaaagcctccagaattgctgatggcagccgag
cttgtggaaacctcgaaacttttcgcacgtggtgtggctgctattgagccctcctgggtg
gaaaccgctgcccgcccattgctcaaacaccagtactcagacccaagctggtcctataaa
cgcggagctgcggtggcaactcaacgttccacactttacggagttcctatcgtcgctgat
cgaacgatttcttatcatcgtgtagatccagaagctgcccgggcaatgtttattcagcat
gcactcattgctggcgagtggaagacttcacataagttttttcatcaaaacctagagaag
ctttctactgcaggcgaatatgaagaaaaagcccgtagacgaggcatcatcgttgatgag
gataccctcttcgaattctacgaccagcgaattccaaattctgtgacccattcgaaagct
ttcgatggctggtggaaaaaagcacgcagaaaacaaccgaacttgctggattttgatccc
gacaagctgctcactgacggggcgactgctgtcactgaacaagatttcccaaatcattgg
cggcacggtggattagacctagagctgacgtatttatttgagccaggccaccgccgtgat
ggcataacggtaaatatcccggtgcccatgttggccaacgtagatccagaaccattcgag
tggttggttcctgggctacgcgaagagctagtgacagagctgattcggagtttgcctaaa
gcattacgccgcagcttggttccagcaccagatttcgccgcacaagccatagatcattta
ctgccttacgaaacagatttactgcagcaggttgcggaagctttccacaaaataggtgca
cgtgggattaatgccagcgatttttcaccggagaaactgcctccgcatctacacatgact
tttgctgctatcgataagcgcgggaaaattatcgatgacgataaagatctcagtgctctg
caacagcgccaagcaggcaaaattagcgcttcgattaccaaaaaaatggaaaacaaggtc
cggcaatcgcaaaattcatcgcaagcagatactagaccccgtatgcacactacccagcgc
acatacgtttctgcttggactaaagaaaacttgggcaccatccccgagcagatcgagcac
gaagttgataatcatttggtcaccgcctatcccgcgctcacgatcaacgaacaagggcta
tcagttcagtactacccaactcgggcagctgcagatactgcaatgatgaccgccacgctg
acattgttgttgcgaagtttgagcgtgaatacccagaaaatggttaatggtctaccgctg
caacaacgggtcgctgtcgaacactaccctcacggcggtgccgacgggttggtcgctgat
gcccgcattgcagcattgcgcgatttactgatagcagaaggagggccagtacggagcccc
gatgaattcgagaaactgaaagccgctatcggaggaaaactcccacgcgaagtacgtcaa
gccgtcgtcacattggcacccggattggtgcggtattctgcactcgccgacgagctaagc
aactgggaaggcccagcgattgatgatatgagaggtcaattggatttcttattccccaag
caagctatcagcacccacggaatacaacagctacgtcatctgcctcggtatttgcgagcg
atagaaattcgtttatctgacatgacaactgccccagacaaggatggagaacgccaagac
attatcgatgactgccacgcttatttagagaatcgcctacgccgacttccttccggagcg
gaaagatcttcggcggtggcaaaaattcggtggatgatcgaagaattacgggtgagctta
ttcgcacagcgcttgggaactgcacatcctgtttctgcgcgacgtatccacaaagctatc
gatgccctcgggaaaaattctccaactaaatcacaaaagtaa
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