Corynebacterium pseudodiphtheriticum: L9H27_06265
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Entry
L9H27_06265 CDS
T08839
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cpsp
Corynebacterium pseudodiphtheriticum
Pathway
cpsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L9H27_06265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpsp03019
]
L9H27_06265
Messenger RNA biogenesis [BR:
cpsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L9H27_06265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
BLTP1_N
Motif
Other DBs
NCBI-ProteinID:
UQV55396
LinkDB
All DBs
Position
complement(1386955..1389216)
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AA seq
753 aa
AA seq
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MTESRTRSRKVSRKAGPPEDAATVAQSLSQSSGATDAAPSPSFKPPEANPQSGGSDNDGA
GNSQNRQKSNKPNKQGAQKQSKPNKPDNKKSGKNPRSNNREDSGSNKQGAAKDSENNHGD
GKDNNGGNSAKGRGRGSRGRNNRGRGGNNQGGGNNQGGNNNRGRRNVPKSMQGADLTKRL
PEPPQLQKGSLRMYALGGISEIGRNMTVFEYDGKLLIIDCGVLFPSSGEPGVDLILPDFG
PIEKKIDKVEALVVTHAHEDHIGAIPWLLKLRPDIPIVASKFTLALIAAKTKEHRQKPKM
VEVNEKSDVSYGPFRCRFWAVNHSIPDALGIMLNTPAGSIIHTGDIKLDQTPLDNRPTDL
PALSRYGDEGVDLMLCDSTNATVPGVSATEADIAPTLKRIVASAKNRVIVASFASNVYRV
QAAIDAAVAAHRKVAFNGRSMLRNMEIAEKMGYLRVPKGTIIPIEEASKMAPHKTMLITT
GTQGEPMAALSRMARREHRQITVRAGDLIILSSSLIPGNEEAVFGVMNMLSQIGAELITN
ADAKVHSSGHGYAGELLFLYNAARPKNAWPVHGEWRHLRANKELAISTGVPRERVMLAQN
GVVIDMANGKAEVVGQKTVGNLYVDGLNMGNVDADTLADRTSLGAGGVVSITCVVDNRTS
QLLERPRVETTGFAEDDRALIPQVVELVDNTMNDLAAEGENDTYRMVQKLRRKVSRFIEQ
NWKREPVILPTVVPMASEIEIVDDEVDNSRESI
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgactgaatctcgcacccgttcccggaaagtttcccgaaaagcggggccaccggaggac
gctgcaaccgtagcgcaatcactgtcgcaatctagtggtgccactgatgccgcgccaagc
ccttcgttcaagccaccagaggcgaatccacagtctggtggatccgacaacgatggtgct
ggcaacagccaaaaccgacagaagtcgaacaagcctaataaacagggggcgcagaagcag
agcaaacccaacaagccagataacaaaaaatctggcaagaatccccgctctaataaccgg
gaagattctggttcaaataaacaaggtgccgctaaagacagcgaaaacaaccatggcgac
ggcaaggacaataacggaggtaactccgctaaaggtcgtggccgtggttcccgtgggcga
aataaccgtggccgtggtggcaacaaccagggtggcggtaacaaccagggcggcaacaac
aatcgtggtcgccgtaacgtaccgaaatcgatgcaaggcgctgatctgaccaaacgcctg
ccagaaccaccccagctgcaaaaaggctcgctgcgtatgtacgctcttggtggaatttcg
gagattggtcgcaacatgaccgtctttgagtacgatggcaagttgctgatcatcgactgt
ggcgtgttattcccgtcgtctggagaaccaggcgtcgacttgatcttgcctgactttggc
ccgatcgaaaagaagatcgataaggtagaagcgcttgttgtgacacacgcgcacgaagac
cacattggggctatcccatggctgctgaagctgcggccagatattccaattgtggcttcg
aaattcactttggcgttgattgctgcgaagactaaagaacaccgccagaagccgaagatg
gtggaagttaacgaaaagtcagatgtcagctacggtccgttccgttgccgtttctgggct
gtcaaccactccatcccagacgcgctgggaatcatgttgaacaccccagctggttcaatc
attcacacgggcgacattaagctggatcagaccccattggacaatcgtccgacagatctt
ccagccttgtcacgttatggtgacgaaggcgtagacctaatgctgtgtgattccaccaat
gcaacggttcctggtgtttctgctaccgaggcagatatcgctccgacgttgaagcggatt
gtggcgtctgcgaaaaaccgcgtgatcgttgcgtcctttgcatctaacgtttaccgtgtg
caggccgccattgatgccgcggtagcagcgcaccgtaaggttgcttttaacggacgctcg
atgctgcgaaacatggagatcgcggaaaagatggggtacctccgtgtaccaaaaggaacc
atcatcccgatcgaagaagcctcaaagatggccccgcacaagaccatgctcatcactacc
ggtacgcagggtgagccgatggctgcattgtcgcgcatggctcgtcgcgagcataggcag
atcaccgttcgagcaggagatcttattatcctgtcttcctcgctgatccctggtaacgaa
gaagcagtttttggcgtgatgaatatgctttcgcagatcggcgctgagctgattaccaat
gcagatgctaaggtgcactcgtcgggccacggttatgctggtgaactgttattcctctat
aacgcagcgcgaccaaaaaatgcatggccagtccacggtgaatggcggcatctacgcgct
aacaaagagcttgccatttctactggggtgccgcgcgagagagtcatgttggcccagaat
ggcgtggtcattgatatggctaacggtaaagcagaggttgtcggacaaaagaccgttgga
aacctctacgttgatggcctaaatatgggcaacgtcgatgcggataccttggctgaccgt
acgagcttgggcgctggtggcgtcgtttctattacgtgcgtggtcgataaccgaacttca
cagcttttggagcgcccacgtgtggagacaacgggttttgcagaagatgatcgtgccttg
atcccacaggtcgtcgagctcgtggataatactatgaatgatcttgctgcggaaggtgaa
aacgacacctaccgcatggtgcagaagttgcgccggaaggtatctcgcttcatcgaacaa
aattggaaacgcgaacctgttatcctgccaacggttgtaccaatggcttcggaaatagag
atcgtcgacgacgaggtcgataattctcgcgagtccatctaa
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