Cytobacillus pseudoceanisediminis: M5V91_02665
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Entry
M5V91_02665 CDS
T09231
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cpss
Cytobacillus pseudoceanisediminis
Pathway
cpss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M5V91_02665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpss03019
]
M5V91_02665
03009 Ribosome biogenesis [BR:
cpss03009
]
M5V91_02665
Enzymes [BR:
cpss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M5V91_02665
Messenger RNA biogenesis [BR:
cpss03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M5V91_02665
Ribosome biogenesis [BR:
cpss03009
]
Prokaryotic type
rRNA helicases
M5V91_02665
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
AAA_30
AAA_22
NDK
NAT10_TcmA_helicase
DUF4422
AAA_19
Flavi_DEAD
DD_DDX21-DDX50
Motif
Other DBs
NCBI-ProteinID:
UQX54752
LinkDB
All DBs
Position
488897..490345
Genome browser
AA seq
482 aa
AA seq
DB search
MTTFSDFGLSNEIVKALSNMGFEEPTPIQAQAIPIGMKGKDMIGQAQTGTGKTTAFGVPL
LEQIDLNEGIQGLVLAPTRELAVQVAEELNRIGQVKGVRTLPVYGGQDITRQIRALKKHP
HIIAATPGRLIDHIERKTIRLSNIKMVVLDEADEMLNMGFIEDIERILSEIKGERQTLLF
SATMPKRIQSLAEKFMQEPEMVKVKAKEMTVKNIEQYYMEVHEKQKFDVLCNLLDIQSPE
LAIVFGRTKKRVDEVVEGLIKRGYSAEGIHGDIPQAKRDQVIRRFKEQTIDIMVATDVAA
RGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAGNKGLAITFVSPREIDHLKIIESVTKS
KMAKKPVPSFKDVVAGNQQATINKLMEVIEKEEHADFKRVAESLLEDTDSVTLLAAAIKL
LTKGPDVTPVKLTAVEPIRVRKPKGDRGGRRFNDRSRGGSRDRRDFKGGRDRRTKNRSSN
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
ttgacaactttttcagattttggcttaagtaatgaaatagtaaaagccctttccaatatg
ggcttcgaggaaccaacaccaattcaggcacaggcaattccaatcggaatgaaggggaag
gacatgattggccaggcgcagactggaactggaaaaaccactgcttttggtgtgccgctg
ttagagcagattgatttaaacgaaggtattcaaggtctagtccttgcgccaacacgggag
cttgctgtacaggtggcagaagaattaaaccgtataggacaggtaaaaggagtccggaca
cttcctgtttacggtggtcaggatatcacccgccaaattcgtgcgcttaaaaagcacccg
catattattgctgctacaccgggaaggttaattgatcacattgaaagaaaaacaatccgt
ttaagcaacatcaagatggtagttctggatgaagcggatgaaatgcttaatatgggcttc
atcgaggacattgaaagaattttaagtgaaattaaaggtgagcgccaaacccttcttttc
tcagcaacaatgccaaaaagaattcagtctcttgctgaaaaattcatgcaggaaccagaa
atggttaaagtcaaagcgaaagaaatgactgttaaaaatattgagcagtactatatggaa
gtgcatgaaaaacaaaaatttgatgtgctttgcaatctgttggatattcagtcacctgaa
ctggctattgtgtttggaaggactaaaaagcgtgtagatgaagtggtggaaggtcttatc
aagagaggctattcggctgaaggaattcatggtgatatcccccaggcgaaaagagatcag
gttatccgccgttttaaagagcagacaatcgacataatggtagccactgacgttgctgca
cgaggtctggatatttcaggtgtttcccatgtttataacttcgatatcccgcaggatcct
gaaagctacgttcaccggattggacgtactgggcgtgccggaaataaagggctggcaatt
acgttcgtttctccaagagaaattgaccacctaaaaataattgaaagtgttacaaaaagc
aaaatggcgaaaaagcctgttccttcctttaaggatgttgttgcaggcaatcagcaggcg
actattaataaacttatggaagttattgaaaaagaagaacatgcagacttcaagagagtg
gcggaaagccttcttgaagatacagattctgttactttgcttgctgcagccatcaaattg
ctgactaaaggtcctgatgtaacaccggttaaattaactgcggtggaacctatccgtgtc
agaaaacctaaaggtgatcgcggcggaagaagattcaacgacaggtccagaggcggcagc
cgtgatagaagagattttaaaggcggccgggacagacgcactaaaaaccgcagcagcaat
aagggataa
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